Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3316 ATGACAATGGAAGAAGAACAAGTATCCTTAGCAGGAACACTACCATTTGATAGAGCTGTTGAACAGGCAATTGTATCTATAAAGAAAGGTTCATATTTACTCAAATGTGGTAGTAGAGGAAAGCCAAAGCTTTGCCCTTTCAGACTTTCTCCGGATGAGAGAAATTTGATCTGGTGCTCCGGGCAGCAGGAGAAGCATTTGCGGTTGAGCGGCGTTACCAGAATTGTTCAAGGACAAGGAAATAATATAAGGTCTCAGAAACAAAGCGAAACCGAAAAGGAATGCCATTCATTTTCACTGATCTATGCTAATGGAGAACACTCTCTTGATCTGATATGCAAGGATAAAGCACAAGCTGCTACTTGGTTTGTTGGATTGAAAGCAGTGATTTCAAGGTTCCAGCAACCTAAAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTTAGTAGTCCGTCCGGAATTTTACGGCGAAAGAAAAATCTCGGTCTTCTAGACGACACCTCTCAATTTACTCAGGTACATAGTGTATGTGCAAGTCCAAGTTTGTCACTTTCAGAAAGGTGTTTTTCTGATGGACTGTCATATGCATCTGATAACTTCTATTCATCGGCATCATCGCTTTCGAGCATTCACGGTATTGCAGATAACTCAGTCCCGAGTTCGCCATATATTAATCCAGATATTCATAGCCATATTAAAACATCTCGTTTCGAAAAGGAGTACAAAAAGGATTTGTCATCATATAGATCTATCATGCCTCTTACCTCTCCACATGTAGGAAATAACAGTAGTGTGTTGAAGGATGTAATGATATGGGGTGGAGGAATTGGTTGCCTTGTAGGGATTGTGAATGAAAGGTTTGTCCAAAATAGTAATTATTCTTTAGTGCCGAAGTTACTCGAATCCATGGCAATGTTAGATGTACAAAATGTAGCTTTAGGAGGAAACCATGCTGCCATAGTTACAAAACAAGGTGAAGTATTCTGTTGGGGTCAAGGGAAGTGGGGAAGGTTGGGGCAGAGAATTGATATGGACACTAGTTCCCCGAAAATAGTTGATTCTCTTAATGATATTCGTGTAAAAAACGTTGCATGCGGCGAGTATCATACATGTGCTTTGACGGATTCTGGTGAAGTATATGCGTGGGGGAACGATGTTTCTTGTTCGGGTTTGGTTGATGAAGGAAGGATTAGAAGTCAGTGGTTAACGCATAAACTTTTTTTACCTGTAGAGGGTATTAGTATTTCGAGTGTTGCTTGTGGCGAATGGCATACCGCTATGGTTTCTAGCTGCGGTCGGTTGTTTACATATGGAGACGGTACATTTGGAGTGCTTGGACATGGGAATTATCAGAGCGCTTCTAGTCCAAAAGAGGTTCAGTCTCTTAAGGGTCTATGTGTGAGGTCTGTTGCTTGTGGAACATGGCATACGTCTGCAATCATCGAAGTCATTGCCGACCGTTTTAAGTACAATACTTCTACGGGTAAGCTGTTTACATGGGGTGATGGAGATGAGGGGAGACTCGGTCATTCTGATAATGGAAACAAGCTCGTACCAACATGTGTTTCGCAGCTTGTCGACTACGATTTTGTTCAAGTATCTTGTGGAAGGATGATGACATTAGCGCTTACTAGCATGGGGAAAGTTTTTGCAATGGGAAGTTCAAAGTTTGGACAATTGGGAAATCCACATGTTAAGGATAGAGCAGTTATGGTTGAAGGGATGCTTAAACAAGAGTATGTTAAAAAGATATCTTGTGGTTCATATCATGTTGCGGTTTTGACATCTTCAGGGAGTGTCTACACATGGGGCAAAGGTGAAAATGGACAACTCGGGCTTGGTGATACCGAAAACCGATACACGCCTTCTTTTGTCGAGGCATTAAGAGACAGGCAGGTAGAAACAATAACTTGTGGTCCAAGTTTCACAGTTGCAATATGTTTGCATAAACCTATTTCAATTAGTGACCAATCAAGTTGTAGTGGTTGTAGGTTACCATTTGGCTTCACAAGGAAGAAACACAACTGTTATAACTGCGGTCTTTTGTTCTGCGGCGCTTGTAGTAGTAAAAAAGTTATGAATGCGTCTCTAGCCCCGGTTAAAAGCAAGGCTTTTCGCGTCTGTGATTCATGCTTTGATCGAAAGCAAGGAACTAGTAGTAGTAGTACTAATTCAATTATGGACTCGTCAAAGTCTAGAAATTATAACCATCAGCATTTACAAAAGCATAAGAACAAGAGTTATGATCTCACTGAAGATAGAGGTGAAACAAATGTAACAAACGGGCCTTTATTATCGCTTGGTCAATCATGCTACCGGAAAAACATGCCTAGTGGAAGGAAGGTTTGGAAAAACCAACAAGAAAGCCAACAGGATATAGAAGATAGTTCTTCTAAGTTAGGTAGTTTGCCACAATGTGGACAAGTTCCATGTTCAGCACAATTTCGAAGCAATTGTACGGATAATTCAGTTGTGCATGATTCTTCAACCAAAAGTAGAATAGCTACTGTTTCACCACTCAATGTAGAATCCACAGATGCAGCAAAGTCTGATAAGTTACTCATAGAAGTTCAGAGGCTGAGAGCTGAGGCTAGGAGACTTGAAAAGCAATGTGAACTCCAAAGCCACGAAATACAAGAGTGCCAACATAAAATCGAGGAGAGTTGGTCTGTGGCGAAAGAGGAAGCTGCTAAATGCAAAGCAGCAAAAGAGGTCATAAAAGCTTTGGCATTAAGGCTTCACACATTATCAGGAAAAGATAATCATGGACTAGAACAAAAAGCCGGGCTACAAGAATTTCTTCCAAATTTGGCACCTATACATACAGATACGACTACTCCAAGAAATACCAACATGGATAGTCTATCGAATTCGCCTATAGTATTTTCCAGTGCATTAAGATCCAAATTTGGTAGAAGTATGCTCCTGAAAAATGACAAATTGATGGACAACAACACTAACCTCACTACACCAGAATCTCAACAAGACGCAGCAGATGGCTTGAAGGCTGAATGGGTAGAACAGTACGAGAATGGTGTTTACATCACATTGATATCCTCGCCGACCGGAGAAAAAGGACTTAAGCGCGTGAGATTTAGCCGGAAGCGATTTGCGCAGAAGGAAGCTGAAAGATGGTGGGAAGAGAATCAAGCAAAAGTGTATCATAAGTATGGAATTGAAGGATATCAGAAGTAA 3207 0.4097 MTMEEEQVSLAGTLPFDRAVEQAIVSIKKGSYLLKCGSRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTRIVQGQGNNIRSQKQSETEKECHSFSLIYANGEHSLDLICKDKAQAATWFVGLKAVISRFQQPKAFSSLRSCKGVQSCVSSPSGILRRKKNLGLLDDTSQFTQVHSVCASPSLSLSERCFSDGLSYASDNFYSSASSLSSIHGIADNSVPSSPYINPDIHSHIKTSRFEKEYKKDLSSYRSIMPLTSPHVGNNSSVLKDVMIWGGGIGCLVGIVNERFVQNSNYSLVPKLLESMAMLDVQNVALGGNHAAIVTKQGEVFCWGQGKWGRLGQRIDMDTSSPKIVDSLNDIRVKNVACGEYHTCALTDSGEVYAWGNDVSCSGLVDEGRIRSQWLTHKLFLPVEGISISSVACGEWHTAMVSSCGRLFTYGDGTFGVLGHGNYQSASSPKEVQSLKGLCVRSVACGTWHTSAIIEVIADRFKYNTSTGKLFTWGDGDEGRLGHSDNGNKLVPTCVSQLVDYDFVQVSCGRMMTLALTSMGKVFAMGSSKFGQLGNPHVKDRAVMVEGMLKQEYVKKISCGSYHVAVLTSSGSVYTWGKGENGQLGLGDTENRYTPSFVEALRDRQVETITCGPSFTVAICLHKPISISDQSSCSGCRLPFGFTRKKHNCYNCGLLFCGACSSKKVMNASLAPVKSKAFRVCDSCFDRKQGTSSSSTNSIMDSSKSRNYNHQHLQKHKNKSYDLTEDRGETNVTNGPLLSLGQSCYRKNMPSGRKVWKNQQESQQDIEDSSSKLGSLPQCGQVPCSAQFRSNCTDNSVVHDSSTKSRIATVSPLNVESTDAAKSDKLLIEVQRLRAEARRLEKQCELQSHEIQECQHKIEESWSVAKEEAAKCKAAKEVIKALALRLHTLSGKDNHGLEQKAGLQEFLPNLAPIHTDTTTPRNTNMDSLSNSPIVFSSALRSKFGRSMLLKNDKLMDNNTNLTTPESQQDAADGLKAEWVEQYENGVYITLISSPTGEKGLKRVRFSRKRFAQKEAERWWEENQAKVYHKYGIEGYQK* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3316 1068 MobiDBLite consensus disorder prediction 784 805 - -
Psa5g3316 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 551 601 IPR000408 -
Psa5g3316 1068 SUPERFAMILY FYVE/PHD zinc finger 659 729 IPR011011 -
Psa5g3316 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 381 435 IPR000408 -
Psa5g3316 1068 Gene3D - 487 654 IPR009091 -
Psa5g3316 1068 Gene3D - 19 137 IPR011993 -
Psa5g3316 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 329 377 IPR000408 -
Psa5g3316 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 601 650 IPR000408 -
Psa5g3316 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 436 484 IPR000408 -
Psa5g3316 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 499 547 IPR000408 -
Psa5g3316 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 551 598 IPR000408 -
Psa5g3316 1068 Pfam FYVE zinc finger 660 718 IPR000306 GO:0046872
Psa5g3316 1068 ProSiteProfiles BRX domain profile. 1007 1062 IPR013591 -
Psa5g3316 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 380 IPR000408 -
Psa5g3316 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 328 IPR000408 -
Psa5g3316 1068 Coils Coil 854 888 - -
Psa5g3316 1068 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 21 1062 - -
Psa5g3316 1068 SUPERFAMILY PH domain-like 19 130 - -
Psa5g3316 1068 MobiDBLite consensus disorder prediction 726 759 - -
Psa5g3316 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 602 653 IPR000408 -
Psa5g3316 1068 Gene3D - 402 486 IPR009091 -
Psa5g3316 1068 Gene3D - 239 401 IPR009091 -
Psa5g3316 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 550 IPR000408 -
Psa5g3316 1068 MobiDBLite consensus disorder prediction 782 805 - -
Psa5g3316 1068 Pfam Pleckstrin homology domain 21 128 IPR001849 -
Psa5g3316 1068 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Psa5g3316 1068 PRINTS Chromosome condensation regulator RCC1 signature 312 325 IPR000408 -
Psa5g3316 1068 PRINTS Chromosome condensation regulator RCC1 signature 331 347 IPR000408 -
Psa5g3316 1068 PRINTS Chromosome condensation regulator RCC1 signature 381 397 IPR000408 -
Psa5g3316 1068 PRINTS Chromosome condensation regulator RCC1 signature 422 438 IPR000408 -
Psa5g3316 1068 PRINTS Chromosome condensation regulator RCC1 signature 438 452 IPR000408 -
Psa5g3316 1068 PRINTS Chromosome condensation regulator RCC1 signature 540 558 IPR000408 -
Psa5g3316 1068 PRINTS Chromosome condensation regulator RCC1 signature 597 618 IPR000408 -
Psa5g3316 1068 PANTHER F12P19.9 PROTEIN 21 1062 - -
Psa5g3316 1068 CDD PH_PLC_plant-like 18 131 - -
Psa5g3316 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 436 487 IPR000408 -
Psa5g3316 1068 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 658 720 IPR017455 -
Psa5g3316 1068 SUPERFAMILY RCC1/BLIP-II 271 654 IPR009091 -
Psa5g3316 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 730 IPR013083 -
Psa5g3316 1068 SMART fyve_4 652 721 IPR000306 GO:0046872
Psa5g3316 1068 Pfam Transcription factor regulating root and shoot growth via Pin3 1006 1061 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3316 Psa-Chr5 260228290 260233718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3316 1003 1068 Major Intrinsic Protein MIP AT1G31880 46.970 8.07e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3316 - - gmx:100797223 1625.91