Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3312 ATGTCACGGGGAGTATTAATATCTATTTACATTATTACCCTTTTATTAACTATTCTATTCACTTCACCGACTACCTCTCATTACTCTTCTCCATCACCTCCCGCCGCACCATTCTCCGAATCCCCTAACGAACCTACCTCTCCTCCCGCCGCCGAATGGCTCTCCGCGCACGCCACTTACTCCTCCTCCTCCGATGACACCAGAGACTCCGTCGACGGCGCATGCGGCTACGGTGACCCTCTCAGAGACGGTTACGGCACCACCGCAGCTTCTCTCAGTGAGACTCTCTTTGTGCGCGGCCAGATCTGTGGCGCATGTTTTGAGCTTCGTTGTTTTGAGGAGGATGTTCCTTTTGACCGGCGGTGGTGCGTCTCCGGCAGTTCTATTGTTGTTACTGCTACCAATTTCTGTGCTCCGAACTATGGTTTTGACGCAGAGAGCGAGGGTGGACATTGTAACCCTCCTAAGCAGCATTTTGTGATTCCGGTTGAAGCATTCGAGAAGATTGCGATTTGGAAAGGGGGTAACATGCCCGTGGAGTATCGCAGGATAAAGTGCCCAAAGGAAGGGAGAATGCGGTTTACAATTACTGGTTCTGGTATATTCAATTCAGTGCTGATAAGTAACGTGGCTGGCATAGGAGACATTGTTGGTGTGAAAGTGAAGGGTTCAAAAACTGGTTGGATTTCTATGGGTAGGAATTGGGGTCAAAATTGGCAAGTAAACGCCTTGCTACAAAACCAACCTCTTTCATTTGAGGTCACAAATAGTGATGGTGTAACCATTACATCTTACAATGTAGCTCCTAAGAATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGTCTTAG 858 0.479 MSRGVLISIYIITLLLTILFTSPTTSHYSSPSPPAAPFSESPNEPTSPPAAEWLSAHATYSSSSDDTRDSVDGACGYGDPLRDGYGTTAASLSETLFVRGQICGACFELRCFEEDVPFDRRWCVSGSSIVVTATNFCAPNYGFDAESEGGHCNPPKQHFVIPVEAFEKIAIWKGGNMPVEYRRIKCPKEGRMRFTITGSGIFNSVLISNVAGIGDIVGVKVKGSKTGWISMGRNWGQNWQVNALLQNQPLSFEVTNSDGVTITSYNVAPKNWTFGQTFEGKQFES* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3312 285 SUPERFAMILY Barwin-like endoglucanases 50 209 IPR036908 -
Psa5g3312 285 PANTHER EXPANSIN-A13 20 284 - -
Psa5g3312 285 SUPERFAMILY PHL pollen allergen 189 280 IPR036749 -
Psa5g3312 285 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 72 191 IPR007112 -
Psa5g3312 285 Gene3D - 38 186 IPR036908 -
Psa5g3312 285 Pfam Expansin C-terminal domain 192 269 IPR007117 -
Psa5g3312 285 PRINTS Expansin signature 84 98 IPR002963 GO:0009664
Psa5g3312 285 PRINTS Expansin signature 149 166 IPR002963 GO:0009664
Psa5g3312 285 PRINTS Expansin signature 166 179 IPR002963 GO:0009664
Psa5g3312 285 PRINTS Expansin signature 190 202 IPR002963 GO:0009664
Psa5g3312 285 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Psa5g3312 285 PRINTS Expansin signature 237 258 IPR002963 GO:0009664
Psa5g3312 285 PRINTS Expansin signature 266 282 IPR002963 GO:0009664
Psa5g3312 285 Gene3D - 191 283 IPR036749 -
Psa5g3312 285 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Psa5g3312 285 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Psa5g3312 285 PRINTS Expansin/Lol pI family signature 93 111 IPR007118 GO:0005576
Psa5g3312 285 PRINTS Expansin/Lol pI family signature 174 190 IPR007118 GO:0005576
Psa5g3312 285 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Psa5g3312 285 PRINTS Expansin/Lol pI family signature 266 280 IPR007118 GO:0005576
Psa5g3312 285 SMART dpbb_1 88 181 IPR007112 -
Psa5g3312 285 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 201 280 IPR007117 -
Psa5g3312 285 Pfam Lytic transglycolase 90 181 IPR009009 -
Psa5g3312 285 PANTHER EXPANSIN-A15 20 284 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3312 Psa-Chr5 258801399 258824989 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3312 52 285 Expansin Gene Family AT3G03220 68.803 3.12e-120 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3312 - - mtr:MTR_3g064510 446.432