Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3307 ATGGCACCTGTTTCATTGCCCCCTGGATTTAGGTTTCACCCCACAGATGAAGAACTTGTTTCTTATTACCTTAAAAGAAAGATTAATGGCCGTCGAATCGAATTGGAAATCATCCCTGAAGTTGATCTATACAAGTGTGAACCATGGGACTTACCAGGGAAGTCATTGCTACCAGGAAAAGATTTGGAATGGTATTTTTTCAGTCCACGAGACAGGAAGTATCCAAATGGATCAAGAACAAATAGAGCTACAAAATCTGGATATTGGAAAGCAACCGGGAAAGATCGGAAGGTGAATTCGCAGACTCGTGCTGTTGGAATGAAGAAAACCCTAGTTTACTATAGAGGAAGAGCTCCCCATGGATCTCGCACCGGTTGGGTTATGCATGAGTATCGTCTTGATGAAAGAGAATGCGACAATCCTTCCTCGGGATTGCAGGATGCATATGCGCTATGCCGAATATTCAAGAAAAATACAGTGATTGTTCCAAAAGTTGGGGAGCAATATGTTAATAATATAACCAGGCATGCAAATCATATGACAAGTGATCAATCATCAAGCATTGAGTTATATTCTGAAGGAAGAGATGAAGTTTTAGAGAGCTCAAATTATTTGATGCCATGGGATTCAAACTCAACCCTAACCCTAAATGGTGGGACTAACACTTTTAGTAACAATGGTGGAGATACCACAAGGGATAATAATGGGATTTGGACACAGTTTTTATCAGAAGACTTACTCAATCTTCCAACATCTTCTTCATCATTTCCCAATTATGGATCGACACCGAATTACCCTCCATCAAAGGTGGATATTGCACTAGAGTGTGCAAGGATGCAACATAGGTTTACCATGCCACCCTTGGAGGTGCAAGACTTCCCTCAAGTTGGCATTTCTGATCTCAAAATGACACAATTCGCCTCGGGTTCCATGTGTGAAACCCGAAATGAAACAGATATCTTGCAGGAAATTCTATCTGTGGCTCAAGCCTCTCAGGAACTGATTAATCAATCAAACTACTCACATGCATTTGGTGGCAATGAAAACTATGGCACTCATGAACATGATAATGATTTTACCTTTATGGTTGGCAATAATAACAGTTACAATCATATGAGTGATCAAATGATGAACTCCATGAGATATGATGACAAAGCTTGGGAAGATCCAAACACAAGATCAATAGAGATTGGGAATCTTGATGATGAATTCAAGACAGAAAGGATGGTTGAGAATTTAAGATGGGTGGGAATGTCAAGCAATGATTTAGAAAAGAGTTTTATGGAAGAGCATCAAAAGGTTGTTCCAATTGAAGATATTTCAAGCTTCCACACAAACAGAAAAGAGAATGAGGTGCAAGTGGAATCTGAGCAACAAAATATGAACAAAGAAATCAATGGTACTGACATTGATAATTTCTCAATGGAGTTTATCAATGATAATGATAACCCTAATGAGAATTTTATAGATGATGGTACTAACATTGATTATTCAAATTCTACAAGCTATGAAGTTGTTGAGGAAACAACAAAAGTTAGTCATGGAATGTTTGTTGCTACACGTCAAGTAGCAAACACATTCTTTCACAAGATAACACCTTCAGAAACAATCAAAGTTCAACTCAATCCAATCATGGAAAACAAAAAATTCATAGAGAAAGCAAAGACATTGATGATACCAAAGAAACAAGGTTACTCTCTCTTAAGAAAAATTAAGGCCAATTTGATGGAGTACATGAAGAAACCATCAAAGACAATAGCAAGTGGCATTGTGTTTATATTTGCACTTTTTTTGGTGCTATGTGTTTATTTGAAGGAGCAAGTTGAAGAAATGAAACCAAAATCAGAGTGTGTGAAAAAGAAGTATTGCTATGGAGCTAATAGCATGAAGAAAATCATTTGGAATGAGAAAGAAAAAGTTTGGTTCGTTGGTATCAAAAGTGGAAAAGGTTTTGATGTGGTGTTGAAGAAGATAGGAATTTTTCTCACCATATCTTTGGCTATTTGTACTATGTGGGCTAACCATATGATATAG 2034 0.3732 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRRIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQTRAVGMKKTLVYYRGRAPHGSRTGWVMHEYRLDERECDNPSSGLQDAYALCRIFKKNTVIVPKVGEQYVNNITRHANHMTSDQSSSIELYSEGRDEVLESSNYLMPWDSNSTLTLNGGTNTFSNNGGDTTRDNNGIWTQFLSEDLLNLPTSSSSFPNYGSTPNYPPSKVDIALECARMQHRFTMPPLEVQDFPQVGISDLKMTQFASGSMCETRNETDILQEILSVAQASQELINQSNYSHAFGGNENYGTHEHDNDFTFMVGNNNSYNHMSDQMMNSMRYDDKAWEDPNTRSIEIGNLDDEFKTERMVENLRWVGMSSNDLEKSFMEEHQKVVPIEDISSFHTNRKENEVQVESEQQNMNKEINGTDIDNFSMEFINDNDNPNENFIDDGTNIDYSNSTSYEVVEETTKVSHGMFVATRQVANTFFHKITPSETIKVQLNPIMENKKFIEKAKTLMIPKKQGYSLLRKIKANLMEYMKKPSKTIASGIVFIFALFLVLCVYLKEQVEEMKPKSECVKKKYCYGANSMKKIIWNEKEKVWFVGIKSGKGFDVVLKKIGIFLTISLAICTMWANHMI* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3307 677 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Psa5g3307 677 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Psa5g3307 677 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 396 - -
Psa5g3307 677 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
Psa5g3307 677 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 396 - -
Psa5g3307 677 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3307 Psa-Chr5 257896943 257901067 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3307 1 671 NAC Transcription Factor Family AT1G65910 43.895 1.57e-164 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g3307 NAM 7.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3307 - - gsj:114381841 944.11