Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3300 ATGTTCAACAAAATCACGACACGACTTCACCACAACATCCTACGTGAGCCACAAGATTCATTCAACTTCTCCACTTTTCCATGTCGGACTCCGACGATTTCATTTCTTCTTTCTCACTTTTCAATCTACATCTCACGTGTCTTTCTTTCACTCTCACACTCACACATTTCACTTACAACTCTTCAATCTACACTTCTTCTCATCAATTCTGTCCAGGAACAACCTAAGTTGAAAACAGTTCTAACAAAGATGAAAAAGGATCAAGATGGATTAACTAGAGTTTCTTTGAATTCTGGATCACATTCTGTTACACATATTCAACTCAGCAATCAGTTATCTTGGGCGAATGACTATGCTCTTAAGATAAGGAAACCATATACTATAACAAAACAAAGAGAAAAATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCGTTAAAGCTGTATGGCCGCGCCTGGCGACGCATTGAAGAACATGTTGGTACAAAGACTGCGATCCAGATTCGAAGTCATGCTCAGAAGTTTTTCTCTAAGGTTCTTCGCGACAAAAGTGAGAGCATTACAAACACTAAGGAGTCTATCAAAATTCCTCCTCCAAGACCGAAACGTAAGCCTATGCATCCTTACCCTCGCAAGCGGGCTGAGACGGCCGGTAGTAAAGAAATTTCTGTCGCGAAAAAGGAAGTGAATTGTAATTCTCTAAGGACATCAGATTTTGATCAAGAAAATCAATCTCCAAAATCAGTATTACCTACACCCGGTTGCGAAAGCCTTGGTTCGTCGGATTCAGATACACCAAATGGAAGTTTGTCTCCAAGATCTTCGATTAGCTGCGTCTGCGCAAGTGTTTCCACGCCTGCTGAATTCAAAACACAATCAGAGGAAGAAGCTGGACTAGATGCTGATTCACCTCCTGATGAGAAACCTCTTATGAAACCTGAGATTCTCCCCGACGAAAGTGTTTCTGCAAAAGAAAGCATAGCAGAAGAATCGTCTCTTCGAAGTCTTAAACTTTTTGGGACGACTCTATTTGTAAAAGATACTCGCAGACCATCTTCTCCAACAATCGAGGCATGCGAACCAATAATACCGCTTGACAAACACGTAAGCAAGGGTGAACAAGAATCGGATTGTCTTGGCAATAGTTCACTATGTGAAACTTCAGCCATATCTCAGTTAAGAGTGAGAGTGAGACGCGAAACATGCGGAAAAGGGTTTGTGCCTTATAAAAGGTGCATGTCAAAGAAGGAAAACCAGTCTTCATCTGCAACAGCTGATGAAAGATAA 1290 0.4124 MFNKITTRLHHNILREPQDSFNFSTFPCRTPTISFLLSHFSIYISRVFLSLSHSHISLTTLQSTLLLINSVQEQPKLKTVLTKMKKDQDGLTRVSLNSGSHSVTHIQLSNQLSWANDYALKIRKPYTITKQREKWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAIQIRSHAQKFFSKVLRDKSESITNTKESIKIPPPRPKRKPMHPYPRKRAETAGSKEISVAKKEVNCNSLRTSDFDQENQSPKSVLPTPGCESLGSSDSDTPNGSLSPRSSISCVCASVSTPAEFKTQSEEEAGLDADSPPDEKPLMKPEILPDESVSAKESIAEESSLRSLKLFGTTLFVKDTRRPSSPTIEACEPIIPLDKHVSKGEQESDCLGNSSLCETSAISQLRVRVRRETCGKGFVPYKRCMSKKENQSSSATADER* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3300 429 ProSiteProfiles SANT domain profile. 130 181 IPR017884 -
Psa5g3300 429 SMART sant 131 179 IPR001005 -
Psa5g3300 429 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 130 179 IPR006447 GO:0003677
Psa5g3300 429 CDD SANT 134 177 IPR001005 -
Psa5g3300 429 MobiDBLite consensus disorder prediction 294 315 - -
Psa5g3300 429 MobiDBLite consensus disorder prediction 230 273 - -
Psa5g3300 429 PANTHER PROTEIN REVEILLE 7-RELATED 92 367 - -
Psa5g3300 429 Pfam Myb-like DNA-binding domain 132 175 IPR001005 -
Psa5g3300 429 PANTHER SWI/SNF COMPLEX-RELATED 92 367 - -
Psa5g3300 429 MobiDBLite consensus disorder prediction 288 322 - -
Psa5g3300 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 181 IPR017930 -
Psa5g3300 429 Gene3D - 134 180 - -
Psa5g3300 429 MobiDBLite consensus disorder prediction 188 273 - -
Psa5g3300 429 ProSiteProfiles Myb-like domain profile. 127 177 IPR001005 -
Psa5g3300 429 SUPERFAMILY Homeodomain-like 126 179 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3300 Psa-Chr5 257578381 257580960 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa5g3300 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3300 - - gmx:780539 392.889