Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3290 ATGGGTCGGGGTCCTAAAGTGTGTACCTCCTGTATTCACAACTGTCGAATGTTTCATCGCCTTCACCCAACAACCACAACCTTACCTACATCTTTCTACAAGTTTATGCTTCGTCAAAACGATCTCAAACTTCTGTATCTTCCTCCTAAGTTAAAACGGAATATGTCTGGTTTGGTCGGTAAGAGCATCAATCTTGAGGATTCAACTGGTGGCAGATGGGTTGTAACAGTATCAAATGTTGATGGTTCTTTAGCTTTTAAGGAAGGATGGAATGTTTTCTCTTTGGATCACAAGCTTGAATTTGGAGATTTGGTGGTATTCAGTTGCATTGACAAGTTGAAGTTTGGTGTCAAGATCTATGATGAATCTGTGTGTGAGAAGGTTGATTTTTCTAAAAGAAGAATTAGGAAAAAGAGAGATAGAAATGGTGAGTTTGTTAGACAAGATCCAAATGCCTCATTTGTTAACTTCCAGACTGAAAATGTTTTAGAAAATGGTAATGTGGATGGAAGGGTTCAATCTGTGTGTGCATTAGACACATGTTACACAACAAGCCATGCATATCAAAATGATACATCCTTTTTTCACAAAGATCCTATGTTTGAAGAAGTGTTGGGTACAGGAGATACCTCATATGCATCTAAACTTGGGTTGCAAGGAAGGAACAATTGTTCAATGGAGCACAAATCTACTGCTTTGATACTAGTAGAAAATAACGAGCGCGAGTCGATTAAGTCCAATGGAGAAGTTCAAGAAGGCGAGCGCCAGTTTGCTGCGGGATTAGGGAGTGATCATGCGGTGATTTCCAAAGAAAAACATGCCTCGCGTGCATTCGAACTTGAAACTTCTGGAAGAAACAATTCTCTTGGTGATTCATCCAAAAATGCATATGAAAAGACTTCAATTTTGAAACATGAAAAAAACAAGGAGGGAAAATCCTTCCTGTCCAAAAAGGAAATTCAAGAGTGCCGTTTTGCCGAGGGCTTAGGTGAGAGGAAGAAAATGCCTGTGAACATGACCTCCAAAAGGCGGCGCCGTTTCAATGATAAATTGCATGCAACAGAGTTGCCAAAGGTTGTTAAGGGAAAGTTTAATCAAAACAATGAAGGTCACTTTGAAACTGTAACCACTATTTCCTGTGAGAATACCAAAGAGAGGTTCAATAAAATATCTAATCTCTTAGATGATTGTATTCAACTAGGTGAGACGAAGGAAGTGCCGGTGGAAATGACTCCCAAATTACGCAATACCAACGATAAAATCAATGTGACAGGGTTGACAGAGGTTATTAAGAGAGAGTTGAATGAAGATGAAACTGCTGCAACTGTCACTGATAACAATTATCTTGAATTGTCTGAACCCTTGCCGATATCTCGTGTTGGATTAGGATCGAAGAGGATGGTGGTGTTTCTTAAGGATCCACTCACGAGATTGTGGCCGGTCTTTTGCCATCAAAAAACTTGGTTGACAAGCGGTTGGTCAGATTTTCAAAGAGCGAATAATTTAAAAACCGGTGATGTGTGTGTTTTCAAGGTCGAAAATAAGTATGAATGTATCGTCGCTGTACACACAGACCACAAGTGA 1584 0.3971 MGRGPKVCTSCIHNCRMFHRLHPTTTTLPTSFYKFMLRQNDLKLLYLPPKLKRNMSGLVGKSINLEDSTGGRWVVTVSNVDGSLAFKEGWNVFSLDHKLEFGDLVVFSCIDKLKFGVKIYDESVCEKVDFSKRRIRKKRDRNGEFVRQDPNASFVNFQTENVLENGNVDGRVQSVCALDTCYTTSHAYQNDTSFFHKDPMFEEVLGTGDTSYASKLGLQGRNNCSMEHKSTALILVENNERESIKSNGEVQEGERQFAAGLGSDHAVISKEKHASRAFELETSGRNNSLGDSSKNAYEKTSILKHEKNKEGKSFLSKKEIQECRFAEGLGERKKMPVNMTSKRRRRFNDKLHATELPKVVKGKFNQNNEGHFETVTTISCENTKERFNKISNLLDDCIQLGETKEVPVEMTPKLRNTNDKINVTGLTEVIKRELNEDETAATVTDNNYLELSEPLPISRVGLGSKRMVVFLKDPLTRLWPVFCHQKTWLTSGWSDFQRANNLKTGDVCVFKVENKYECIVAVHTDHK* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3290 527 SUPERFAMILY DNA-binding pseudobarrel domain 31 125 IPR015300 -
Psa5g3290 527 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0905400-LIKE ISOFORM X1 11 523 - -
Psa5g3290 527 Gene3D - 26 125 IPR015300 -
Psa5g3290 527 ProSiteProfiles B3 DNA-binding domain profile. 434 526 IPR003340 GO:0003677
Psa5g3290 527 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 11 523 IPR044837 -
Psa5g3290 527 ProSiteProfiles B3 DNA-binding domain profile. 30 123 IPR003340 GO:0003677
Psa5g3290 527 CDD B3_DNA 457 511 IPR003340 GO:0003677
Psa5g3290 527 Pfam B3 DNA binding domain 33 121 IPR003340 GO:0003677
Psa5g3290 527 Pfam B3 DNA binding domain 465 515 IPR003340 GO:0003677
Psa5g3290 527 SUPERFAMILY DNA-binding pseudobarrel domain 455 523 IPR015300 -
Psa5g3290 527 CDD B3_DNA 60 121 IPR003340 GO:0003677
Psa5g3290 527 Gene3D - 438 526 IPR015300 -
Psa5g3290 527 SMART B3_2 32 123 IPR003340 GO:0003677
Psa5g3290 527 SMART B3_2 439 525 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3290 32 127 B3 DNA Binding Superfamily AT5G66980 31.000 2.93e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Psa5g3290 B3 5.6e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3290 - - cam:101495675 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3290 5 256927088 256931944 Psa5g3290 5 256927088 256931944 ECH