Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3285 ATGACAAACACACCTTTCTCTTTGGTTCTTTTGTTCTCTCTTTTCATGCCTACCCTTATTTCCTCTTCACCTCTTCAAGACCCTGAATTGGTTGTACAAGAAGTAAACAGGAAAATTAATGCATCTGCAGCTAGGAGAAATTTAGGTTACTTGTCTTGTGGAAGTGGAAATCCTATTGATGATTGTTGGAGATGTGACTCCAATTGGGAGAAAAATAGGCAGAGGCTAGCAGATTGTGCTATTGGGTTCGGCAAAAACGCAATGGGTGGAAAAAACGGTAAAATTTACGTTGTAACGGACTCGGGCAATGACGATCCAGTGAGCCCAAAACCGGGAACACTTCGTCACGCGGTGATCCAAGAGGAACCATTATGGATAATCTTCGCGCGAGACATGGTGATTAAACTAAAAGAAGAATTAATCATGAACTCTTTCAAAACAATTGATGGTAGAGGTGCTAGTGTGCACATTGCTGGTGGTCCATGCATTACTATTCAATTTGTGACCAATATTATCATCCATGGAATAAATATTCATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGACTCCCCACGGCATTTCGGGTGTAGGCTAGGATATTTCCATGTTGTGAACAATGACTACACTCATTGGGAAATGTATGCTATTGGAGGAAGTGCTAATCCAACCATAAACAGTCAAGGCAACAGATTTGTTGCACCGAATGAGAGATTCAGCAAAGAGGTAACAAAGTATGAAGATGCAGCAGAGAGTGAATGGAAGAATTGGAACTGGAGATCAGAAGGAGATTTAATGTTAAATGGTGCATTTTTCACTCCTTCTGGTGGTGGAACTTCATCTAGCTATGCAAGAGCTTCAAGTTTAAGTGCAAGACCTTCTTCTCTTGTGGGTTCTATAACTGTTTCTTCTGGAACACTTAACTGTAAGAAAGGCTCTCCTTGCTAG 951 0.4111 MTNTPFSLVLLFSLFMPTLISSSPLQDPELVVQEVNRKINASAARRNLGYLSCGSGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAMGGKNGKIYVVTDSGNDDPVSPKPGTLRHAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNAMVRDSPRHFGCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPNERFSKEVTKYEDAAESEWKNWNWRSEGDLMLNGAFFTPSGGGTSSSYARASSLSARPSSLVGSITVSSGTLNCKKGSPC* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3285 316 SMART amb_all 131 239 IPR002022 -
Psa5g3285 316 Gene3D - 195 309 IPR012334 -
Psa5g3285 316 Gene3D - 56 194 IPR012334 -
Psa5g3285 316 PANTHER PECTATE LYASE 198 313 - -
Psa5g3285 316 PANTHER PECTATE LYASE 11 199 - -
Psa5g3285 316 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Psa5g3285 316 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Psa5g3285 316 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Psa5g3285 316 PANTHER PECTATE LYASE 18-RELATED 11 199 IPR045032 GO:0030570
Psa5g3285 316 PANTHER PECTATE LYASE 18-RELATED 198 313 IPR045032 GO:0030570
Psa5g3285 316 SUPERFAMILY Pectin lyase-like 77 316 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3285 Psa-Chr5 256769729 256772196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3285 185 316 Polysaccharide Lyase AT5G63180 73.134 6.93e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3285 K01728 - gmx:100101868 365.155