Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3283 ATGGAACCGCCTCAACCATCCAAATCAATTGATTCCTCCACCAAAGACCCACAATTGGATTCTTCCCCTGTTCTCCACCATGATCACAATGATTCTCAACTCTCAGATCTCAATCACGTGACCCACCTTGATGAGGAGCTTCAGAACAAGTTGGATTTGAAAGATGAGGATCAAATTCATGAAAAAGGTTCAAACTTTGAAGCTGCTTCTGTAGAATCTGATAAGGGCCAAGAGTGTCCTAATGATGATGGTTGGAATGGTGATGATGATGACGGGTGGAATGGGGATGATGAGGTGAATGACTGGGTTGAGAATGTGAATGAGAACGTTGATGTTAGTGGAGAAGTTGGTCAAGTGGAGAACAAGGATGAAAGAAGCACTGGTAATAGTAAAGCTGAACTGTACCCATTGAGGCCTGAAGCTGAAGACTGTTCCTTTTATCTCAAAACTGGGACTTGCAAATTTGGATCCAATTGCAAGTTTAATCACCCTTCTAGGAGAAGAAACCCGGCTTTTAAAGAGAGAGTAGGAGAAAGAGATGAATTGGAGAAAACATCAGGCCAGACAGAATGCAAGTATTATTCAAGGTCTGGGGGTTGTATGTTTGGAAAGGATTGTAAATTTGATCACACCAAAGGAAAGTATTCAGCCGTCCAAGTTTTAGAGTTTAACTTCCTCGGACTACCTATTCGTTTGGGTGAGAAAGAGTGTCCCTATTACATGCAGACTGGCTCTTGTAAGTTTGGAGCAACCTGCAAGTTTAATCATCCCGATCCTACATCTGTTGGAGGATATGATTCCTCTTCAGCATATGGTAATGGAAGTTCTATTTCATTACACAATGTATCACAGTCATCTTCTACCAGAAAATTCAATGAAACTGCTACATTTGTGCCAATCATAATTTCACCGAGTCCGGTGGTTTCTCCTCGAAGTTCTGACTGGAATGGATATCAGGCACCAATATATTTAACAGAGAGGAGTATGCATCCTCCTTCACCATATGCCGTGAACAACCCAGCTATTGAAACAAATGTTCGTATGCACCGTCATAAGCAGACGTCTGCTGAAGAGTTTCCAGAAAGACCTGGCGAACCTGAGTGTAGTTTCTTCGTAAAAACTGGGGACTGCAAATTTAAGTTCCATTGCAAATTTCACCATCCAAAGAATCGGATTACAAGATCACCTCCTTGCAACCTAAGTGACAAGGGCCTGCCCTTGAGACCTGGCCAGAGTGTATGCACGCATTACAGCCGATATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACATGCCGCCCCCAACTATGCCTGGACTTTATCAGCAACCCTCTTACACAAATTCGGAAAGTGTTGAGGAGGCAGGAAATGGAGGTGCTAGTGATGCAACAATTCAATAG 1416 0.4287 MEPPQPSKSIDSSTKDPQLDSSPVLHHDHNDSQLSDLNHVTHLDEELQNKLDLKDEDQIHEKGSNFEAASVESDKGQECPNDDGWNGDDDDGWNGDDEVNDWVENVNENVDVSGEVGQVENKDERSTGNSKAELYPLRPEAEDCSFYLKTGTCKFGSNCKFNHPSRRRNPAFKERVGERDELEKTSGQTECKYYSRSGGCMFGKDCKFDHTKGKYSAVQVLEFNFLGLPIRLGEKECPYYMQTGSCKFGATCKFNHPDPTSVGGYDSSSAYGNGSSISLHNVSQSSSTRKFNETATFVPIIISPSPVVSPRSSDWNGYQAPIYLTERSMHPPSPYAVNNPAIETNVRMHRHKQTSAEEFPERPGEPECSFFVKTGDCKFKFHCKFHHPKNRITRSPPCNLSDKGLPLRPGQSVCTHYSRYGICKFGPACKFDHPINMPPPTMPGLYQQPSYTNSESVEEAGNGGASDATIQ* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3283 471 Gene3D - 104 175 - -
Psa5g3283 471 MobiDBLite consensus disorder prediction 450 471 - -
Psa5g3283 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 257 IPR000571 GO:0046872
Psa5g3283 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 164 IPR000571 GO:0046872
Psa5g3283 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 410 434 IPR000571 GO:0046872
Psa5g3283 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 188 210 IPR000571 GO:0046872
Psa5g3283 471 PANTHER PROTEIN PHOSPHATASE RELATED 12 471 - -
Psa5g3283 471 SUPERFAMILY CCCH zinc finger 189 215 IPR036855 GO:0046872
Psa5g3283 471 MobiDBLite consensus disorder prediction 1 20 - -
Psa5g3283 471 SUPERFAMILY CCCH zinc finger 138 166 IPR036855 GO:0046872
Psa5g3283 471 ProSiteProfiles Zinc finger C3H1-type profile. 362 390 IPR000571 GO:0046872
Psa5g3283 471 MobiDBLite consensus disorder prediction 1 37 - -
Psa5g3283 471 MobiDBLite consensus disorder prediction 61 130 - -
Psa5g3283 471 MobiDBLite consensus disorder prediction 83 104 - -
Psa5g3283 471 ProSiteProfiles Zinc finger C3H1-type profile. 408 436 IPR000571 GO:0046872
Psa5g3283 471 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Psa5g3283 471 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 12 471 - -
Psa5g3283 471 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Psa5g3283 471 Gene3D - 329 400 - -
Psa5g3283 471 ProSiteProfiles Zinc finger C3H1-type profile. 231 259 IPR000571 GO:0046872
Psa5g3283 471 Pfam RNA-binding, Nab2-type zinc finger 368 388 - -
Psa5g3283 471 Gene3D - 406 459 - -
Psa5g3283 471 Gene3D - 176 262 - -
Psa5g3283 471 SUPERFAMILY CCCH zinc finger 232 258 IPR036855 GO:0046872
Psa5g3283 471 MobiDBLite consensus disorder prediction 21 37 - -
Psa5g3283 471 SUPERFAMILY CCCH zinc finger 406 434 IPR036855 GO:0046872
Psa5g3283 471 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Psa5g3283 471 SMART c3hfinal6 231 258 IPR000571 GO:0046872
Psa5g3283 471 SMART c3hfinal6 408 435 IPR000571 GO:0046872
Psa5g3283 471 SMART c3hfinal6 362 389 IPR000571 GO:0046872
Psa5g3283 471 SMART c3hfinal6 185 212 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3283 Psa-Chr5 256469775 256473283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3283 358 456 C2H2 Transcription Factor Family AT3G02830 44.444 6.86e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g3283 zf-CCCH 1.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3283 - - gmx:100809906 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3283 5 256469775 256473283 Psa5g3283 5 256469775 256473283 ECH