Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3279 ATGGTAGTTTCTGAATTAAACGCCGACGTATTCCCATGGCTGAAATCCATGCCAGTAGCACCGGAATACCGACCAACCGCCGCGGAATTCGAAGATCCGATCGGTTACATTTTCAAGATCGAGAAAGAAGCATCACAATACGGTATCTGCAAAATCATTCCACCGTTTCCGCCGTCACCGAAGAAAACCGCCATAGCTAACCTCAACCGGTCACTGCCTAATTCCACATTCACGACACGTCAGCAGCAGATCGGGTTCTGCCCGCGGAGGTCACGACCTGTGAAACGACCTGTCTGGCAGAGTGGGGACCACTACACTTTTGCTGAGTTCGAAGCGAAAGCGAAATGGTTTGAGAAAAGTTACATGAAGAAGCATAGCAAGAAGGGCAGTGGTAATGGTAATGGTAGTGGTGCTCTTGAAACGGAGACGCTGTTTTGGAAGGCTACCGTTGATAAGCCTTTTTCAGTTGAATATGCGAACGACATGCCTGGTTCTGCGTTTTCGGCGCAATGTCGTCATGCTGGGGAGGCTGCTTCGGTTGCTCATAGTGCTTGGAATATGAGAGGGGTTTCAAGGGCGAAAGGGTCTTTGTTGAGGTTTATGAAGGAGGAAATTCCGGGAGTTACTTCACCTATGGTTTATCTTGCTATGCTTTTCAGCTGGTTTGCTTGGCATGTTGAGGATCATGATCTGCATAGCTTGAATTATCTTCATATGGGTGCTTCTAAGACATGGTATGGTGTTCCTAGGGATGCTGCTGTTGCTTTTGAGGATGTTGTTAGGGTTCATGGCTATGGTGGAGAGATTAACCCTCTTGTTACATTTTCTATTCTGGGTGAGAAAACCACAGTGATGTCACCAGAAGTGCTTATTAGTGCTGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCAAACATAGCAACACCCGAGTGGTTGAGGCTTGCTAAAGATGCTGCTATTCGAAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTCTTCTAGAATCCCTGGAAGAATCAGTGCGGAACCACGGAGTTCTCGTCTTAAAGATAAAAAGAAGGGTGAAGGAGACTCTGTAGTCAAAGAACTATTTGTCCAGGATGTGTTACGAAACAATGATCTGCTTCATGTACTCGGAAAAGAGTCTTCTGTAGTACTTCTTCCTCGCAGTTCAGTTGACATTTCTATTTGCTCAAAGTTACGTGTTGGATGCCAGCAACAAAAAGTGAACCCTGAATTTCCCATTAATGTATGCAATTCCAAGGAAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGAAATTGCGGAATCCTGCAAGAAAAAAATGTCCAATCTGTGAAAGACAAGTTTACTCTGTCGTGTGAAGGGAAGGGGATTTCCTCATTTGATGCAAATGGCAACACATCCCCTTCAAGTTCTAAGCAACTTCAAACAGGCAACAACAGTGAAACTAATCAAGAAGACGGATTGTCAGATCAGAGACTGTTTTCGTGTGTCACATGTGGACTATTAAACTTTTCCTGTGTTGCTATTGTACGTCCTAGTGAACTAGCTGCTAGATATCTTATGTCTGCTGATTGTAGCTTCTTTGATGATTGGGTTGTTGATTCTGGAGTACCTAGCAATAAACTTGTTGTTGATCGCGAAGATGCAAATATTCCTGAGCCAAATATGCATACAGGGTGGACGAAGACAAATACCCAAGAAGAGGCCTTAAATACTGAAGTAGGAAATGGCAATACAGCTCTTGCATTATTGGCTTCAGCATATGCAAATTCTTCCGACTCTGAGGAAGATGCAATTGACGATCATGAATTGAATGCGATAAACTCTACATCTGAAAGTTTCCCTTCTAATGTTCAGGCTTCCCATGCTAATCCCATGACTAGACATGATAAAAATGATATTCTTTCAGAGAGCGCCAGTTACGATGCACATATATTTGATGTTAATTTGAGTCAGCCTTGTGAACAATCATTCGAGGAACAGGATTATAAAATTACTTCAGAGGCTGCATTTGAAAATACAAGGCCAGTGCCTTATTCCACTGCATATAGTTCCCAAGACGCTAATAATGCTGAAAAGTCATTGTCGGCCGAAGCCATGGTTGCTGCCAATCGTAAAAATGCTTTATTGGTACCGCAATGTGATGAAGACTCGTCTAGAATGCATGTATTCTGTCTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGGCCAATAGGTGGAGCCCACATAGTGCTCTTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGTTGGGGGCAGAAGATTTGGGGATTGATTATACATGGAAGAATATTGCCTACAGGCATGGCACCAAGGAAGATGAAGAGAGGATCCAGGCAGCTGTGGATAGTGAAGAAGCAATTCCCGGGAATGGGGACTGGGCTGTAAAGTTAGGAATAAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCCCTTTATAGCAAGCAGATGCCTTACAATCCTGTTATATATTATGCATTTGGTCGTAGCTCTCCAGCAAGCTCGCCCATAGAACCACAGGTCTATCAGAGAAGGACCGACAGGCAGAAAAAGGTAGTTGCTGGTAAATGGTGTGGTAAAGTTTGGATGTCTAATCAGGTCCATCCCCTTTTAGCAAAAAGGGATTGCGAAGATGTTGAGGATGAGAAAATGTTACATAGATTGACATTGCCTGATATGAAAATTGAGAGATCGGGAAGTACCCCTAAAACTGAAACTGCTAGTACAAAATCCGGTAGGAAGAGGAAGACGGCCTTAAACAGTGGACAGACCAGGAAAGGAAGTTTTGTTGAAAAAGATGTGGTTTTGGATTATACCACTGAAGATAAACCCAATCCTCAGGGAAGGAGGATTCTTAGAAGCAAGCAAGCTAGGGGTGTTGAGAAAGATGGTGCAGCTTTGCACAGGGATTGTTCTCCTTATAGTAGAAAGCCTATGAGCAAACAAAAAAGTTGCACTGAAAGTGATGTAGTTTCTGATGATCCGCTTGAAGATGATTATCACATGCGACATAGGAGTTTTAATGTCGAAAAAGCTAATTTTATTGATAATGATGTGGTTTCAGATGATGCAGTGGACTATGATTCTGATTGTCATCAGATGGGAGAACTTAGAAGCAAGCAAGTTGAAGATACAGAGAGAGACTCAATTTCAGAGGATTCTTTGGATGCCGGTTCTCTTCAGTTGCACATTGAGACTTCTAGAAGCAAGCATGCCAACTTCATTAGTGAAGAAGATGCAATTTCTGATGACCAAATGGAGAATGGTTGTCAGAAGCAACAAAAGAGAATTCCTAAAAGCAGAATAGGAAGTTCCCTTGCTGAAAAAGATTCAGTGATATCAGATGACCAACTGGAGCTGAACATGCAGAATCAGCGCCGGAGTTATTCTAGAAGTAGGAAATCCAAATACCTCCACGAAGAGGATATTGTATCGGATAACCAAACAAATATCTATTGTCGCAAGTACCAAAGAAGAACAGTTAAAGTCAGGCAAGCCAAATGTGTAAGGGAAGATGTAATATCCGACGACCAATTGGAGGATCCCTATCAAAAGCAGAAGCCAATAATTTCTAGAAGGAAAAACAAAGGCATTGATAGAGAATTTAAAAATGAAGTGTCCGATGACCAACAAGAGGATCACTTTCAGAAGCAGCCGCGAAAAATTCCTAAGAGTAGGAGGCACACCATACAGACTGATGAAGAAGTTATTGATGACTCGGCTGATGACAATGCCCGTCTGCTGCATAGAACTTCTAAAAGGAAGAAAGCTAAATTCAAGGATGAAGATGATATGAGTTTAGATAATGAAATAGATGATTCTCTTCAGCAGCACAGAACTCTACCAAGTAAACAATCCAAACCAAAGACACTTAAACGGATGAAACAAGTCAAATCTCTCCCGATGAAAAACCAGACACCTCGGCCAGTGAAACGAGGGGCTCAGATGCTGATGAAATCAAAGGCTGCTCAGCAAGTAAAGCAGTCTTCTCATTTGCGAAATAAACAATCTGGTAACTCCAGAGAGCCTAGTTTAGATTTGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGAAAGAGACTCCCAAAAGCCGAGGAGTCTGAAGCAAAATCAAAAGACAAACAAACCAAAAGGAAAAGGACAAAGGATGCTACAGCAGCTACTCTTGTTTCAGCCCGCAATGCCAAAACAGAGGACGAGGAAGCAGAATATCAGTGTGACATCGAGGGATGCGCCATGAGTTTTGATTCAAAACAGGAGCTGCTGCATCATAAGAAAAATATCTGCCCAGTAAAAGGTTGCGGGAAAAAGTTCTTTTCACACAAATATCTGGTGCAGCACCGGCGAGTTCATGAAGATGACCGCCCGCTCAAGTGTCCCTGGAAAGGGTGCAAGATGTCTTTCAAGTGGGCATGGGCTCGAACTGAGCATATCCGAGTCCACACCGGTGCACGTCCTTATGTATGTGCGGAGCCAGGTTGTGCGCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGGAAGACTGGTCATTTAGCAAAGAAGAGTCGTCAATAA 4737 0.4294 MVVSELNADVFPWLKSMPVAPEYRPTAAEFEDPIGYIFKIEKEASQYGICKIIPPFPPSPKKTAIANLNRSLPNSTFTTRQQQIGFCPRRSRPVKRPVWQSGDHYTFAEFEAKAKWFEKSYMKKHSKKGSGNGNGSGALETETLFWKATVDKPFSVEYANDMPGSAFSAQCRHAGEAASVAHSAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVLISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRLAKDAAIRRASINYPPMVSHFQLLYDLALALSSRIPGRISAEPRSSRLKDKKKGEGDSVVKELFVQDVLRNNDLLHVLGKESSVVLLPRSSVDISICSKLRVGCQQQKVNPEFPINVCNSKEMNSSKGFVSDDLVFNRNCGILQEKNVQSVKDKFTLSCEGKGISSFDANGNTSPSSSKQLQTGNNSETNQEDGLSDQRLFSCVTCGLLNFSCVAIVRPSELAARYLMSADCSFFDDWVVDSGVPSNKLVVDREDANIPEPNMHTGWTKTNTQEEALNTEVGNGNTALALLASAYANSSDSEEDAIDDHELNAINSTSESFPSNVQASHANPMTRHDKNDILSESASYDAHIFDVNLSQPCEQSFEEQDYKITSEAAFENTRPVPYSTAYSSQDANNAEKSLSAEAMVAANRKNALLVPQCDEDSSRMHVFCLEHAVEAEQQLRPIGGAHIVLLCHPDYPKIEAEAKLGAEDLGIDYTWKNIAYRHGTKEDEERIQAAVDSEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNPVIYYAFGRSSPASSPIEPQVYQRRTDRQKKVVAGKWCGKVWMSNQVHPLLAKRDCEDVEDEKMLHRLTLPDMKIERSGSTPKTETASTKSGRKRKTALNSGQTRKGSFVEKDVVLDYTTEDKPNPQGRRILRSKQARGVEKDGAALHRDCSPYSRKPMSKQKSCTESDVVSDDPLEDDYHMRHRSFNVEKANFIDNDVVSDDAVDYDSDCHQMGELRSKQVEDTERDSISEDSLDAGSLQLHIETSRSKHANFISEEDAISDDQMENGCQKQQKRIPKSRIGSSLAEKDSVISDDQLELNMQNQRRSYSRSRKSKYLHEEDIVSDNQTNIYCRKYQRRTVKVRQAKCVREDVISDDQLEDPYQKQKPIISRRKNKGIDREFKNEVSDDQQEDHFQKQPRKIPKSRRHTIQTDEEVIDDSADDNARLLHRTSKRKKAKFKDEDDMSLDNEIDDSLQQHRTLPSKQSKPKTLKRMKQVKSLPMKNQTPRPVKRGAQMLMKSKAAQQVKQSSHLRNKQSGNSREPSLDLEEEEEGGPSTRLRKRLPKAEESEAKSKDKQTKRKRTKDATAATLVSARNAKTEDEEAEYQCDIEGCAMSFDSKQELLHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCAQTFRFVSDFSRHKRKTGHLAKKSRQ* 1579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3279 1578 ProSitePatterns Zinc finger C2H2 type domain signature. 1547 1571 IPR013087 -
Psa5g3279 1578 ProSiteProfiles Zinc finger C2H2 type domain profile. 1485 1514 IPR013087 -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 946 982 - -
Psa5g3279 1578 Gene3D Classic Zinc Finger 1482 1569 - -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 1407 1442 - -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 1240 1275 - -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 1142 1156 - -
Psa5g3279 1578 Pfam jmjN domain 21 54 IPR003349 -
Psa5g3279 1578 ProSiteProfiles Zinc finger C2H2 type domain profile. 1545 1576 IPR013087 -
Psa5g3279 1578 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 1377 1397 - -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 1134 1164 - -
Psa5g3279 1578 ProSiteProfiles JmjC domain profile. 179 348 IPR003347 -
Psa5g3279 1578 PANTHER LYSINE-SPECIFIC DEMETHYLASE 5 1568 - -
Psa5g3279 1578 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 5 1568 - -
Psa5g3279 1578 SMART JmjN_1 19 60 IPR003349 -
Psa5g3279 1578 Gene3D Cupin 13 352 - -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 1240 1287 - -
Psa5g3279 1578 ProSitePatterns Zinc finger C2H2 type domain signature. 1517 1539 IPR013087 -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 1324 1446 - -
Psa5g3279 1578 ProSiteProfiles Zinc finger C2H2 type domain profile. 1515 1544 IPR013087 -
Psa5g3279 1578 SMART cupin_9 179 348 IPR003347 -
Psa5g3279 1578 ProSitePatterns Zinc finger C2H2 type domain signature. 1487 1509 IPR013087 -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 508 531 - -
Psa5g3279 1578 SMART c2h2final6 1485 1509 IPR013087 -
Psa5g3279 1578 SMART c2h2final6 1515 1539 IPR013087 -
Psa5g3279 1578 SMART c2h2final6 1462 1484 IPR013087 -
Psa5g3279 1578 SMART c2h2final6 1545 1571 IPR013087 -
Psa5g3279 1578 Pfam JmjC domain, hydroxylase 212 330 IPR003347 -
Psa5g3279 1578 SUPERFAMILY Clavaminate synthase-like 193 362 - -
Psa5g3279 1578 SUPERFAMILY beta-beta-alpha zinc fingers 1501 1543 IPR036236 -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 956 982 - -
Psa5g3279 1578 MobiDBLite consensus disorder prediction 997 1021 - -
Psa5g3279 1578 SUPERFAMILY beta-beta-alpha zinc fingers 1533 1567 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3279 Psa-Chr5 256404981 256415062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3279 1364 1576 C2H2 Transcription Factor Family AT3G48430 54.425 8.94e-68 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g3279 JmjC 3e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3279 - - mtr:MTR_3g075210 2369.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3279 5 256404981 256415062 Psa5g3279 5 256404981 256415062 ECH