Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3276 ATGATGGATGCTCTGTTTCCTCCCACCACCTCCTCCTCCACCAAACCCGATCTTTACATCAACGGTCCCAGAAGAACGCGCGTTCCTGCTCACGCAGCCATTTTGGCTTCAGCATCCCCTGTTCTAGAGAACATGGTAAAATCCAACAGAATCATCGAAATCCACGGCGTTCCATACAACGCCGTCACAGCCTTTGTACGTTTCTTCTACACCTCCAGGTGCAGCGAAGAGGATATTGAAAATTACGGAATACACCTTCTTGCATTATCGCACGCGTATTCAGTACCAAAGCTGAAACAGAGGTGCGTCGTTGGATTATCCAAACTTGCGGCTATAGAGAATGTGGTGGACGTGTTGCATTTAGCAAGACTCTGCGATGCACCGGATCTTTACCTCAACTGTGCCATGTTAATTAGGAATAAATTCAGAGCAGTGCGGAAAACAGAGGGATGGAAATTCTTGCACACACATGATCCTTGTCTGGAAAACAACATTGTCGAATTCATCAACGAGAACAAATCGAGGAAGAAGAGAATGAAGAGACAGAGGAAGGAACAAGAGGTCATTATGCAGCTGAGCGAAGCCATGGAATGTTTGGAACATATATGTACCGAAGGATGCACCAGCGTGACGCCGTACGATGTGGATGTTAAGGAACAGAGGACGAGGATGCCTTGTTCCAAATTCTCCACGTGTCAAGGTTTGCAGGGACTGATTCGACATTTTGCCACGTGTGAGAAGAGGATCAAGGGAGATTGTATGAGGTGTAAGCGACTGTGGCAACTTTTTAGACTTCACTCTTGTATTTGCCTTCATCAAGATTCATGCAAGGTCCCTCTATGCAATTTCAATTGA 855 0.4608 MMDALFPPTTSSSTKPDLYINGPRRTRVPAHAAILASASPVLENMVKSNRIIEIHGVPYNAVTAFVRFFYTSRCSEEDIENYGIHLLALSHAYSVPKLKQRCVVGLSKLAAIENVVDVLHLARLCDAPDLYLNCAMLIRNKFRAVRKTEGWKFLHTHDPCLENNIVEFINENKSRKKRMKRQRKEQEVIMQLSEAMECLEHICTEGCTSVTPYDVDVKEQRTRMPCSKFSTCQGLQGLIRHFATCEKRIKGDCMRCKRLWQLFRLHSCICLHQDSCKVPLCNFN* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3276 284 SUPERFAMILY POZ domain 26 104 IPR011333 -
Psa5g3276 284 Pfam TAZ zinc finger 193 281 IPR000197 -
Psa5g3276 284 ProSiteProfiles BTB domain profile. 16 78 IPR000210 GO:0005515
Psa5g3276 284 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 11 282 IPR044513 -
Psa5g3276 284 SMART TAZ_2 186 282 IPR000197 -
Psa5g3276 284 Pfam BTB/POZ domain 25 106 IPR000210 GO:0005515
Psa5g3276 284 SUPERFAMILY TAZ domain 184 281 IPR035898 -
Psa5g3276 284 Gene3D Potassium Channel Kv1.1; Chain A 11 110 IPR011333 -
Psa5g3276 284 Gene3D - 111 181 - -
Psa5g3276 284 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 2 11 282 - -
Psa5g3276 284 Gene3D TAZ domain 182 283 IPR035898 -
Psa5g3276 284 CDD BACK 112 154 - -
Psa5g3276 284 SMART BTB_4 14 110 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3276 Psa-Chr5 256207232 256210156 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Psa5g3276 zf-TAZ 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3276 - - gmx:100813611 376.711