Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3275 ATGATGGATGGGCGGCGGCATTCTGTTGATATACCGATTTCTAAGGCTCTTGTGGCATTGAGGAGAGTGAGGTCATTGAGGGATCCATCAACTAATTCTATGATCAAACATTCTTCTCTGATGGAGAACTTACATTGGGATAACCGTTCCGGCAATGGGATTTCTCTGCTGTTTCCGGATGATGTTCGCGTTTGTGATTCTGATGATAGCCTTGCTTTTAGAACAAGGAATTTAGGTTTTGAGGGGCAAAGAGAGATGGGTACTGCTACTGGTTTTGAATTGCATAATGGTCTGTTGAATTCGCGGCTGAATTGTTCGGGTGTTTATGGAAATAAATCGCCTAATGAAAGCTGTGGTAGTAACCATGGTGGTAAAGGATTGGGTATGAATGATTTCGAGGATGGCGAATTAGGCTTTAGAGCAACGGGTAGATCATCTAAATTAGGGAGAATAGATCGCAGTAAGTCGGCTAAAAGGCTGTTACGCAAGAATCAAGTTAAACCATCTGATGTAATGGGAGATATTGCTAGCCATTTGAGCAGTCCATGCCGCTCTGTTCGTGATGCTTTATTGCCCCATGGTTCCTTGGCGTATATAAATCGAGATTTTGATGTTCAAGATAATAGTGATAATGGATGTGGATTGAGTTATTGTTGGTCAAAGTCACCAAGGTTTGTAGAGTCGGATATTTATTGTGAGACAGAAGATCGTCCCTTGATATTGCACTGTGTGGAGGACATAGAACTTCATGAACATAAAAGTGCCGGACAGAGTTATGGCGAAGAAAGTCCAAATTTGGAAACACCTAGAATGTTATCTATGAAATTCAGGCCTAAATTGTTTGGTGATTTGGTGGGACAAGATGTGGTTGTTAGGTCTCTTTTGGGTGCTATTTCTAGTGGAAGGATAACATCGTTTTACCTTTTCCATGGTCCACGCGGTACGGGCAAGACATCTGCGTCAAGAATATTTGCTTCGGCGCTGAATTGCCTTGCTGTTGGGGAGCAAAGACCGTGTGGTCTGTGTAGAGAATGTGTTCTATTCTTTTCTGGAAGAAGTAAAGATGTTAAGGTAGTTGATTCTGTGAAAATCAATCAAACGGACCAGGTTAAATCTCTTGTTAAGAATGCGTGTTCTCCTCCGGTTAATTCACGTTTTAAGATTTTCATTATCGACGAGTGCCAGTTATTGAACGAGGAAACGTGGGCTTGCCTTTCAAATAACCTAGAGAACATTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCAAAGTGCAGTTTCCCGGGCTCAGAGGTATTACTTTCCAAAGGTTAAAGACGCTGATATTGCACGCCGATTAGAAAAAATTTGTGCCGAAGAAGTTCTTGATTATGAACAACCTGCTTTGGACCTTATTGCTGCAAAATCCTGTGGTTCTGTTAGGGATGCAGAAATTATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAGATTAACGTTTCTTTAGTTTATGAGCTTACCGGAATTGTTTCGGATGATGAATTGTTTGATTTGCTAGATTTGGCCCTATCACCTGACACCACAAATACAGTTATAAGAGCTCGTGAGCTGATGAGATCGAGGATAGATCCTATGCAACTTGTATCACAGTTGGCAAATCTCGTTATGGACATCCTTGCGGGGAAATGTGATTATGAAGCCAGAAGTAGATTTTCTAGTAGATACACATCGGAAGCAGACCTTCAGAAACTAAGCCATGCATTGAGAATACTCTCCGAGGCCGAGAAACAATTAAGAATTTCAAAAAATCAAACGACATGGTTCACTGTAGCTCTTCTACAGTTAAGCTCGATTGATTATCCTTCCACAAATGCAGATGGTACCAAGTTGCTTCTGAGAGGGCAGAGTTTGGAACACCTTGCTTCAGGTGGTTGTGAAAACAAGTCATTTAGATTAGTGGCGCACGAGGATCACGAAGGAACACTCGATTCGATATGGTATAAAGCTACCGGGACATGTCAATCTAGTCAGCTCAAAACTTTTCTCAGAAAGAAGGGAAAGTTGTCTTCACTTCATGTTGATCAATCTACTTCTTGTCTTGGTATTGCAGAGTTGGAATTCGGCCATCGGCGCCATGTATCCAAGGCTGAGAAGTCATGGAAATCGATAGCAAGTTCCTTGCAACGCATATTGGGTTGTAACATTGAGTTGAGGATCACTCATGTACCTCATACTTCTAATTCACCGAAGAGGTTATCTTTCAACATGTTTAGTTGTTCGCGCAAAATACAACAGAAATCATCCTCGTCCAATGAACAAGAAAGTGAAATAGACTATGCTGACTACACTTCTCAAAAATCAATGATGAAGAATACAACTCTATCTTCTTCCTCTGACTGTGGATCCCAGGAGCCACCTCTGAAGTCATATGAAGGAATGGATGTTATAACGACTCTGAGGAGTTGTGAGGGCAACTTGCTCAGTTCAAGAGAAAGATTTTCGAATCGGTCTTCTCTAGAAACTATGGTAGCATCATGTTCTAGAGTTGATTCGTACAATGAAGATGGACACAATGGTGCGTGTTTAGTTCCATCAGTTCCCAATTCAGATAATCAGGCTAACTGTTTTCCTCAAACTCTATGGTTTCAAAAGAAGTTCCGAGTTTTAGGAACCACTTGA 2676 0.4122 MMDGRRHSVDIPISKALVALRRVRSLRDPSTNSMIKHSSLMENLHWDNRSGNGISLLFPDDVRVCDSDDSLAFRTRNLGFEGQREMGTATGFELHNGLLNSRLNCSGVYGNKSPNESCGSNHGGKGLGMNDFEDGELGFRATGRSSKLGRIDRSKSAKRLLRKNQVKPSDVMGDIASHLSSPCRSVRDALLPHGSLAYINRDFDVQDNSDNGCGLSYCWSKSPRFVESDIYCETEDRPLILHCVEDIELHEHKSAGQSYGEESPNLETPRMLSMKFRPKLFGDLVGQDVVVRSLLGAISSGRITSFYLFHGPRGTGKTSASRIFASALNCLAVGEQRPCGLCRECVLFFSGRSKDVKVVDSVKINQTDQVKSLVKNACSPPVNSRFKIFIIDECQLLNEETWACLSNNLENISQHVVFVMITPDLDKLPQSAVSRAQRYYFPKVKDADIARRLEKICAEEVLDYEQPALDLIAAKSCGSVRDAEIMLDQLSLLGKKINVSLVYELTGIVSDDELFDLLDLALSPDTTNTVIRARELMRSRIDPMQLVSQLANLVMDILAGKCDYEARSRFSSRYTSEADLQKLSHALRILSEAEKQLRISKNQTTWFTVALLQLSSIDYPSTNADGTKLLLRGQSLEHLASGGCENKSFRLVAHEDHEGTLDSIWYKATGTCQSSQLKTFLRKKGKLSSLHVDQSTSCLGIAELEFGHRRHVSKAEKSWKSIASSLQRILGCNIELRITHVPHTSNSPKRLSFNMFSCSRKIQQKSSSSNEQESEIDYADYTSQKSMMKNTTLSSSSDCGSQEPPLKSYEGMDVITTLRSCEGNLLSSRERFSNRSSLETMVASCSRVDSYNEDGHNGACLVPSVPNSDNQANCFPQTLWFQKKFRVLGTT* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3275 891 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 100 872 - -
Psa5g3275 891 CDD AAA 285 435 - -
Psa5g3275 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 271 493 IPR027417 -
Psa5g3275 891 Gene3D - 264 442 IPR027417 -
Psa5g3275 891 Gene3D - 445 507 - -
Psa5g3275 891 Gene3D - 508 618 - -
Psa5g3275 891 Pfam DNA polymerase III, delta subunit 287 444 - -
Psa5g3275 891 SUPERFAMILY post-AAA+ oligomerization domain-like 508 615 IPR008921 GO:0003677|GO:0006260
Psa5g3275 891 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 100 872 - -
Psa5g3275 891 CDD HLD_clamp_pol_III_gamma_tau 444 507 IPR045085 -
Psa5g3275 891 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 271 614 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3275 Psa-Chr5 256105441 256109734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3275 263 509 Core DNA Replication Machinery Family AT1G21690 25.581 1.84e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3275 - - gmx:100819111 1143.64