Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3270 ATGGTTTCAACGAGACGCAACAGTGGTGGTGGATCTTTCCCCGCCGCTAAAAGACCTTCTTCATCTTCCGATGACAAACCTCCCTCTCCTTCCCCTAAGCGCCAAAAGCCTGACAATGGTGCTGCTGCTACTTCCTCGGAGAAACCGATATCGATATCTCCGACGGAGAATTCCAAGGATTTTCGTACTCCAGAACCTCCCGCCGATCCAGGAGAATGTGCTCCCACCGATGCTCAGATCGAAGAACCGGTACCTGCTGATGATAAAATCGATGCAACACCGCCGATCGCTGAGGGTTCTTCGCCGACTCTGGTAGCTGATAAACCTAGGGCTTCGTTCTCTTCATGGAGTATATATCAGAAACAAAATCCAATCCTCGAGTCTTCAGCTCCCTGGTGTCGGCTTCTGTCCCAGTCTGCACAGCATCCAAATGTTCCCATTTCCATACCCAACTTCACTATTGGCTCAAGCAGAAATTGCAATTTTCATTTGAAGGATCATACAATAAGTGGAAATTTATGCAAAATCAAACACACACAGAGCGAGGGAAGTGATGTGGCTGTGTTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTCAATGGGACACTTGTCAAGAAGAATGCCTGGTGCGCGCTAAACTCGGGTGATGAGGTGGTTTTCGGATTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACTGAAGTTGCAGCTAAGGGTGCAGAAGTTCAGAATGGCGTTGGTAAATTTATGCAGCTAGAAAGGAGAAGCGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATCTTGGCTTCTCTTTCTAACCTCAGACAAGATCTTAAAAGATGGAAATCTCCATCTCAGACTGCCAGTAAGCCTCACCAGGGTGCTGATGTTTCTATTCATACTGTCCTCCCTGATGGTACAGAAGTTGAGCTTGATGGTCTGGAAGGCAACTCAACTCCAAATATAGGAACTGATAAAGCTGCTGATGCTGAGGCTAGCAACAAGAACTCTCCTATGGATTACGATCCAGAGGATGCAGGCGCAGAGCCAGGCAATGTATTGGAAGAAAGAAATGGGGTGGAGGACACACAAGCCGCTTCGATTTCGGGTACATCTGTACGTAGTGCTGTTTTCAAAGAAGATGCTCATGCCGCAATACTGGATGGAAAAGAACTAGAAGTGTCCTTTGACAGCTTCCCATACTATTTAAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTGTTTTATACACCTGAAGCATAAAGAGCATGCAAAGTATACCACAGATCTCACCACCGTAAATCCCCGTATTCTACTTTCAGGACCTGCAGGATCAGAAATATATCAGGAGATGCTTGTAAAAGCACTTGCGAAATACTTCGGGGCTAAATTGCTCATATTCGATAGCCAGTTGCTTTTGGGTGGTTTATCTTCTAAGGAAGCTGAGCTTCTCAAAGATGGAATTGCTGCCGATAAATCTTGCAGCTGTGCCAAACAAAGTCCTACAGCCATAGACACGGCTAAGAGCATGGATCCACCAGCTAGTGAAACAGATACACCTAGCTCTTCTAATGCTCCTACTCCACACGGACTTGAATCTCAAGCTAAGTTGGAAACTGATAATGTACCATCTACATCTGGATCAGCTAAAAATTGCTTGTTTAAACTAGGCGACCGGGTTAAGTATAGTTCATCTTCTGGGTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAAGTTGTCTTAATTTTCGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAACCTATACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAACGTCACTGATCTTCGATTGGAAAACAGTGGCATTGACGAACTCGACAAGTTACTTATTAATACATTGTTTGAGGTGGTAACTAGTGAGAGTAGAAATTCACCTTTCATTTTGTTCATGAAAGAAGCAGAAAAGTCTATAGTAGGAAATGGGGATCCATACTCATTTAAAAGTAAGCTTGAAAAGCTTCCTGACAATGTGGTGGTAATAGGTTCACATACTCACACCGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACGAAGTTTGGCAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCGGATAGTTTTGGAAGATTACATGACAGGGGGAAAGAAGTCCCAAAACCAAACAAAACTTTGACTAAGCTATTTCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGTGCTTCTAGCATCATGGAAACAACAACTTGATCGAGATGTGGAGACTCTTAAAATCAAAGGAAATTTGCACCATTTGCGCACTGTTTTAAGCCGTAGTGGGATGGAATCTGAAGAACTCGAGGCCTTGTCTGTCAAGGATCTGACACTTACAAATGAAAATTCAGAGAAGATTGTTGGTTGGGCTTTAAGCCACCATCTGATGCAGAATTCTGATGTCGATGCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGTATCCAGTATGGAATTGGGATCTTACAGGCTATCCAGAATGAGTCGAAGAGCCTAAAGAAGTCTCTTAAGGACGTTGTAACAGAAAACGAATTTGAAAAGAGGCTTTTGGGTGATGTTATTCCACCTAGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTTAAGGATACATTGAAGGAATTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAGTTAACCAAGCCATGCAAGGGAATTCTATTATTTGGTCCCCCGGGAACAGGTAAGACAATGCTTGCCAAGGCAGTTGCTACCGACGCCGGTGCAAACTTCATCAATATTTCCATGTCAAGCATCACATCTAAGTGGTTTGGTGAGGGTGAAAAATACGTCAAAGCCGTTTTCTCCCTGGCAAGCAAAATTGCGCCCAGTGTGATATTTGTTGATGAAGTTGATAGCATGTTGGGTCGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGCAAGATGAAAAATGAATTCATGGTGAACTGGGATGGTTTACGTACAAAGGATACTGAAAGAGTTCTTGTGCTCGCAGCCACCAATAGACCTTATGACCTTGACGAGGCTGTCATACGAAGGCTGCCTCGGAGATTAATGGTAAATTTACCAGATGCTCCAAATAGAGCAAAAATATTAAAAGTTATACTTGCAAAGGAAGATCTGTCTTCTGATGTTGATCTGGGTGCAATTGCAACTATGACTGACGGATATTCTGGAAGTGATCTCAAGAACTTATGTGTAACTGCTGCACACCGTCCTATTAAAGAGATATTAGAAAAGGAAAAAAAGGATCTTGCTGCTGCTCAAGCAGAAGGTAGACCTGCACCTGCATTACGTGGAAGTGATGATATCCGATCTTTAAATATGGAAGATTTTAAACATGCTCACCAACAGGTATGTGCAAGTGTTTCTTCCGAATCTGTTAATATGACGGAGCTTTTACAATGGAATGAACTCTATGGGGAAGGTGGTTCAAGAGTCAAGAAAGCACTAAGCTATTTCATGGCTTGCGGCTGCGCCATTTCGGTTGTAAAATGA 3654 0.4349 MVSTRRNSGGGSFPAAKRPSSSSDDKPPSPSPKRQKPDNGAAATSSEKPISISPTENSKDFRTPEPPADPGECAPTDAQIEEPVPADDKIDATPPIAEGSSPTLVADKPRASFSSWSIYQKQNPILESSAPWCRLLSQSAQHPNVPISIPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQSEGSDVAVLESTGSKGSVLVNGTLVKKNAWCALNSGDEVVFGLHGNHSYIFQQVNTEVAAKGAEVQNGVGKFMQLERRSGDPSAVAGASILASLSNLRQDLKRWKSPSQTASKPHQGADVSIHTVLPDGTEVELDGLEGNSTPNIGTDKAADAEASNKNSPMDYDPEDAGAEPGNVLEERNGVEDTQAASISGTSVRSAVFKEDAHAAILDGKELEVSFDSFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQLLLGGLSSKEAELLKDGIAADKSCSCAKQSPTAIDTAKSMDPPASETDTPSSSNAPTPHGLESQAKLETDNVPSTSGSAKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKSIVGNGDPYSFKSKLEKLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEVLLASWKQQLDRDVETLKIKGNLHHLRTVLSRSGMESEELEALSVKDLTLTNENSEKIVGWALSHHLMQNSDVDADAKLVLSCESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLGDVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATDAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPYDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDLGAIATMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKDLAAAQAEGRPAPALRGSDDIRSLNMEDFKHAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFMACGCAISVVK* 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3270 1217 MobiDBLite consensus disorder prediction 282 301 - -
Psa5g3270 1217 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 81 1207 - -
Psa5g3270 1217 CDD AAA 941 1074 - -
Psa5g3270 1217 MobiDBLite consensus disorder prediction 38 60 - -
Psa5g3270 1217 Pfam AAA+ lid domain 1096 1132 IPR041569 -
Psa5g3270 1217 SMART AAA_5 939 1076 IPR003593 -
Psa5g3270 1217 Gene3D - 901 1182 IPR027417 -
Psa5g3270 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 1183 IPR027417 -
Psa5g3270 1217 MobiDBLite consensus disorder prediction 507 534 - -
Psa5g3270 1217 Pfam ATPase family associated with various cellular activities (AAA) 943 1072 IPR003959 GO:0005524|GO:0016887
Psa5g3270 1217 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 81 1207 - -
Psa5g3270 1217 MobiDBLite consensus disorder prediction 1 28 - -
Psa5g3270 1217 Gene3D - 131 240 - -
Psa5g3270 1217 Coils Coil 863 883 - -
Psa5g3270 1217 CDD FHA 132 232 IPR000253 GO:0005515
Psa5g3270 1217 MobiDBLite consensus disorder prediction 1 73 - -
Psa5g3270 1217 Pfam FHA domain 153 222 IPR000253 GO:0005515
Psa5g3270 1217 Gene3D - 1075 1169 - -
Psa5g3270 1217 SUPERFAMILY SMAD/FHA domain 115 232 IPR008984 GO:0005515
Psa5g3270 1217 MobiDBLite consensus disorder prediction 320 344 - -
Psa5g3270 1217 ProSitePatterns AAA-protein family signature. 1046 1065 IPR003960 GO:0005524|GO:0016887
Psa5g3270 1217 MobiDBLite consensus disorder prediction 282 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3270 Psa-Chr5 255774517 255787782 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3270 902 1150 Calmodulin-binding Proteins AT3G56690 40.234 1.01e-41 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3270 - - gmx:100780098 1944.47