Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3263 ATGGTATCTCAAGGTACAAATTATGTCATATGGAATTTTGCTTTCCCCATTGTCATTTTTATCCTATTCACTCCAAAACTTAGTTGTGCCAAACAATCCAAGTTAATGGATTTGAATATGAATATGAATATGATTGATAATTGTTGGAGGCCAAATCCTGAATGGAGGAGACATAAGCAACAAATAGCGACTTGCTCTGTAGGCTATGCTGGAAAAATGATAAACAACATTGGTAAGGACCTTATACATTATAAAGTTACCGATCCAAATGATGATCCTATGAACCCAAAAATGGGTACATTGAGATATGGAGCCTCTGTAATTCAAGGTAAAGTATGGATCACATTTCAAAAAGACATGAACATTAGACTCCTGAAACCCCTTCTCATTAGTAGTTTCACTACCATTGATGGTCGCGGTGTCAATATCCATATTGCAGACAATGCATGTTTAATGATATTCAAGGCCACCGACATAATAATTCATAGTATTCGAATTCATCACTGCAAAGCTCAAACCTCGGGGATGGTGATGGGGCCTAATGGAAAGGTAATTCATTTGGGTCCCGTTGATGGAGATGCAATAAGATTGGTTACTGCTTCAAAAATTTGGATTGATCATAATACACTTTATGATTGCGAAGATGGTCTTCTTGATGTCACTCGAGGTTCTAGTAATGTGACTATATCCAATAATTGGTTTAGAGAACAAGATAAAGTTATGCTTCTTGGTCATGATGATGGATATGTGAGAGACAAAAACATGAAGGTTACTGTTCTGTATAATTATTTTGGACCTAACTGCAACCAACGAATGCCTAGGATTCGTCATGGATATGCACATGTAGCGAATAATCTTTATTTAGGATGGGTGCAATATGCCATTGGTGGAAGTATGGAACCTAGTCTAAAAAGTGAGTCTAACCTCTTTATAGCACCAAAAGTTGGGAGTAAGGAGGTAACATGGAGAAACATTGGTCAAACAAATGGGAACAAATGGGAATTTCATTCAATAAGAGATGCATTTGAAAATGGAGCCTCTTTTGCGGTAACAAAAGGTGGACGTGTGCCAAAGCCAAATTACAACAAAGAACAAAGTTTTAAAGTTGTTGATGTTAAATATGTTAGATCATTGACAAGAATATCAGGCGCATTTCAATGCAGTAGAACCTCAATATGTTAA 1182 0.3655 MVSQGTNYVIWNFAFPIVIFILFTPKLSCAKQSKLMDLNMNMNMIDNCWRPNPEWRRHKQQIATCSVGYAGKMINNIGKDLIHYKVTDPNDDPMNPKMGTLRYGASVIQGKVWITFQKDMNIRLLKPLLISSFTTIDGRGVNIHIADNACLMIFKATDIIIHSIRIHHCKAQTSGMVMGPNGKVIHLGPVDGDAIRLVTASKIWIDHNTLYDCEDGLLDVTRGSSNVTISNNWFREQDKVMLLGHDDGYVRDKNMKVTVLYNYFGPNCNQRMPRIRHGYAHVANNLYLGWVQYAIGGSMEPSLKSESNLFIAPKVGSKEVTWRNIGQTNGNKWEFHSIRDAFENGASFAVTKGGRVPKPNYNKEQSFKVVDVKYVRSLTRISGAFQCSRTSIC* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3263 393 SUPERFAMILY Pectin lyase-like 38 359 IPR011050 -
Psa5g3263 393 SMART amb_all 119 316 IPR002022 -
Psa5g3263 393 PANTHER PECTATE LYASE 18-RELATED 2 390 IPR045032 GO:0030570
Psa5g3263 393 PANTHER PECTATE LYASE 2 390 - -
Psa5g3263 393 Gene3D - 42 386 IPR012334 -
Psa5g3263 393 PRINTS Pollen allergen Amb family signature 65 82 IPR018082 -
Psa5g3263 393 PRINTS Pollen allergen Amb family signature 127 143 IPR018082 -
Psa5g3263 393 PRINTS Pollen allergen Amb family signature 191 212 IPR018082 -
Psa5g3263 393 PRINTS Pollen allergen Amb family signature 271 290 IPR018082 -
Psa5g3263 393 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Psa5g3263 393 PRINTS Pollen allergen Amb family signature 333 357 IPR018082 -
Psa5g3263 393 PRINTS Pollen allergen Amb family signature 364 387 IPR018082 -
Psa5g3263 393 Pfam Pectate lyase 130 310 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3263 Psa-Chr5 255563237 255564874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3263 73 320 Polysaccharide Lyase AT5G09280 71.371 4.12e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3263 K01728 - gmx:100780437 649.818