Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3259 ATGGCCACCACCAAGTCACAGTCACAGTCTAACGCCACCATTGATCCAAACTCTGGTTTCTCCTCTCATTCTAGAATCTTCCATAGCCTCCGTCCAAACGTTCCTCTTCCTCCTCCTTCTCTCCCTCTCTCCCTCACCGAGTACGTACTCTCTCTCATCCCCGCTACCGCCACCGAAAACAACATCACCGCCGTCATAGACTCCACCACCGACAACCGCCTCACTTACCCCACCTTCATCCGCCAAATCAAAGCCCTAGCTTCCTCTCTTCAATCACACACCTCTCTCTCCAAAGGCCATGTCGCATTAATCCTCACTCCTACTTCCTTACACGTCCCCGTACTCTATTTCTCCCTCCTTCTCCTTGGCGTCACCATCGCACCTGCTAACCCACTCAGTTCCCAATCCGAGTTAACTCACATCGTTCATCTCACAAAACCAGTCATCGCGTTCGCAACTTCCTCAACCGCTTCCAAAATCCCTAACCTCCCTTTCGGCACAATCATAACAGATTCTCCTTCTTTCCTTTCCATGCTTAACTCTAACTCCGAGCCTCGCCGAGTCGAAACGAGTCAATCAGACACAGCGGCGATTCTCTTCTCTTCGGGGACTACCGGACGGGTTAAAGGCGTGTTGTTAACTCATCGTAACTTCATCGCTTTGATTGGAGGGTTTTGTTCCCTGAAGCATGTTTATGATGACGGCCTTGCAAATGAACCGCATCCGGTGTCGCTGTTTCCGCTTCCACTTTTTCATGTGTTTGGATTTTTCATGATGATGAGGGCTATGTCTATGGGGGAGACTCTGGTGTTCATGGAGAGGTTTGATTTTGAAGGGATGTTGAAGATTGTAGAGAAGTATAGGGTTGTCTATATGCCAGTGTCGCCGCCGGTAGTTACGGCGTTTGCTAAGTCGGATTTGGTGAAGAAATATGATCTTAGTTCGATCCGGTTGTTAGGATCCGGTGGCGCGCCGCTTGGGAAGGAAGTTGCGGAGAGCTTCAAAGCAAAATTCCCCAATGTGGAAATTGTGCAGGGTTATGGTCTGACTGAAAGTGGAGGAGGGGCATCAAGAATGATAGGCTTTGATGAGGCTAAGCACCATGGTTCTGTGGGTCTACTAGCAGAAAATATGGAGGCTAAGATAGTTGATCCTGTTACTGGAGAGGCATTATCTCCTGGCCAAAGAGGGGAGCTTTGGATTCGAGGACCAACAATCATGAAAGGTTACATAGGAGATGACAAGGCGACTATTGAGACATTGGATTCAGATGGATGGTTGAAGACCGGCGATCTTTGTTATTTTGACTCTGATGGTTTTCTATTCATCGTGGATAGACTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTAGAGCTCATTCTTCTTACTAATCCTGAAATTGCGGATGCCGCAGTAGTTCCGTATCCTGATGAAGATGTTGGACAGATTCCAATGGCGTTTGTGGTAAGAAAGCCGGGAAGCAACATCACTGCAGCTCAGGTCATGGAGTATGTGGCAAAGCAGGTGGCACCATACAAGAAGATAAGACGTGTTTCTTTTGTTAACTCTATACCAAAATCTCCATCAGGCAAAATTTTAAGAAGAGAATTAGTGGCTATTGCTCTAAATAGTGGTTCATCCAAATTGTGA 1668 0.4712 MATTKSQSQSNATIDPNSGFSSHSRIFHSLRPNVPLPPPSLPLSLTEYVLSLIPATATENNITAVIDSTTDNRLTYPTFIRQIKALASSLQSHTSLSKGHVALILTPTSLHVPVLYFSLLLLGVTIAPANPLSSQSELTHIVHLTKPVIAFATSSTASKIPNLPFGTIITDSPSFLSMLNSNSEPRRVETSQSDTAAILFSSGTTGRVKGVLLTHRNFIALIGGFCSLKHVYDDGLANEPHPVSLFPLPLFHVFGFFMMMRAMSMGETLVFMERFDFEGMLKIVEKYRVVYMPVSPPVVTAFAKSDLVKKYDLSSIRLLGSGGAPLGKEVAESFKAKFPNVEIVQGYGLTESGGGASRMIGFDEAKHHGSVGLLAENMEAKIVDPVTGEALSPGQRGELWIRGPTIMKGYIGDDKATIETLDSDGWLKTGDLCYFDSDGFLFIVDRLKELIKYKAYQVPPAELELILLTNPEIADAAVVPYPDEDVGQIPMAFVVRKPGSNITAAQVMEYVAKQVAPYKKIRRVSFVNSIPKSPSGKILRRELVAIALNSGSSKL* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3259 555 PANTHER 4-COUMARATE--COA LIGASE-LIKE 9 27 544 - -
Psa5g3259 555 Gene3D - 26 448 IPR042099 -
Psa5g3259 555 SUPERFAMILY Acetyl-CoA synthetase-like 59 549 - -
Psa5g3259 555 Pfam AMP-binding enzyme 58 453 IPR000873 -
Psa5g3259 555 Pfam AMP-binding enzyme C-terminal domain 462 537 IPR025110 -
Psa5g3259 555 Gene3D - 449 550 IPR045851 -
Psa5g3259 555 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 27 544 - -
Psa5g3259 555 CDD 4CL 63 543 - -
Psa5g3259 555 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3259 Psa-Chr5 255275188 255286750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3259 6 555 Monolignol Biosynthesis Gene Families AT5G63380 58.156 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3259 K01904 - gmx:100804044 833.558