Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa5g3249 | ATGGCCGCTCTCACGTCTCTCCCTCCCCTTCCTCACACTCTCCTCTTTCTCCGCTCAAAACCAACCAGACTTTCCGTTTCCGCTTCCGCTTCAGCGCTCTCAGTAGGTAATGATGGATCTAGTTCTAGAGTACCTCACAAGAGAAGAGGAAGAATCGAAGGTCCACGGAAAAGTATGGAAGATTCTGTTCAACGCAAGATGGAGCAGTTTTATGAAGGTTCCGATGGACCGCCTTTGCGCGTTCTACCTATTGGTGGTTTAGGTGAAATTGGAATGAATTGTATGCTTGTAGGGAATCATGACCGATATATCCTCATTGATGCCGGTATCATGTTTCCTGATTATGATGACCTTGGAGTACAAAAGATTATACCTGATACAACTTTTATAAAAAAATGGAGCCACAAAATTGAAGCGGTTATTATAACGCATGGTCATGAAGATCATATCGGTGCGTTGCCTTGGGTCATCCCAGCATTGGATTCGAATACACCGATTTTTGCATCTTCCTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAGCATGGTCTTTTTCTTCCATCTAGACTCAAAATCTTTAGAACAAAGAACAAGTTTGTTGCCGGTCCATTTGAAATAGAACCTATTAGGGTGACTCATTCTATTCCTGACTGTTGTGGACTAGTTCTTCGTTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGACGAGACACCGCTTGATGGGAAGGTGTTCGATCGAGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTGCTCTCGCCCGGAAGGACAACCAGTGAATCTGTTGTAGCAGATGCATTACTGAGGCATATTTCAGCTTCTAAAGGAAGGGTCATTACAACCCAGTTTGCATCAAATCTACATCGGATTGGAAGTGTGAAGGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTATTGGTATGTCCTTAAGGACATACTTAGAAGCAGCTTGGAAGGATGGAAAGGCGCCTTTTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCACCCAAGGATCTGCTTATTGTAACAACCGGCTCTCAAGCAGAGCCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGCCATTTTTTCAAACTTACCAAGGAAGATATTATTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGGAAATGATGAATCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAGAAATGAATTCTTGCACACATCTGGTCATGCATATCGTGGAGAATTAGAGGAAGTACTTAGAATAGTGAAGCCGCAACATTTTCTTCCTGTACATGGAGAATATTTGTTCCTGAAGGAGCATGAATCACTTGGAAAATCAACTGGCATTCGGCATACTGCTGTTATAAAGAACGGAGAGATGCTTGGGGTTTCACACTTGAGAAATAGAAGGGTTCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGACAAAGCATTTGGTACATCTAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATGATTGTGATTAGCATGGAAATATTTCGCCCTAAAAACTTAGAAAGTTTGGCTGAAAACACCTTGAAAGGGAAGATAAGGATTACTACGAGATGCCTATGGCTAGACAAAGGGAAGCTGTTAGATGCACTTTATAAAGCTGCTCATGCAGCGCTTTCTAGCTGTCCCGTTAAAAGCCCACTGCCTCACGTGGAAAGAACTGTGTCTGAGATGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCCGAAGTAATTGCCATTGCCATAGAAAACTCTGGAGCTGTTTTGGCGGATGAGATAAACACAAAATTGTCTGGCAAGTCCCGTGTTGGTCCTGGAATATCAACATTAAGAAAGGTAGTGGATGAACGTAGAAAGGAAAACCAATCCACCACAACACAAATAAAAGATGATGACAATGATATTGAAGGGCTATTACCTGAGAAAGACACCACTACAAGTGAAGCTGAGGGTGATTTACCCGATTCAGAGGATACAGATGAATTTTGGAAACCATTTATTGCATCAGTTGAGAAATCAAATAAGGCTAACAATGGTTATGTTCCACTAAAGGAGTATAAGTCCAATCTGAAGCAAGATGATTCTGAAGACATTGATGAAGCCAAGTCTGAAGAAATGTCTAATGCTGAGCCAGAATCATCAAAATCAGTAAAGAAAAATAAATGGAAAGCTGAGGAAGTTAAAAAGCTGATTGATTTGCGGAGTGACCTCCATGACAGATTTAAAGTTGTGAAGGGAAGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGTAGAAGTCCTGCACAATGCAAATCTCGGTGGACATCTTTGGTACTGAAATATGAGGAGATCAAGAATGGGAAGGATGGCAAAAAAAATTGGCTATATCTTGAAGACATGGAAAGGATATTGTCTAGTGACAAAGCACCGGCATCAAATTGA | 2604 | 0.4128 | MAALTSLPPLPHTLLFLRSKPTRLSVSASASALSVGNDGSSSRVPHKRRGRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGIMFPDYDDLGVQKIIPDTTFIKKWSHKIEAVIITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIKKRLKEHGLFLPSRLKIFRTKNKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFIGMSLRTYLEAAWKDGKAPFDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHFFKLTKEDIILYSAKVIPGNESRVMEMMNRISEIGSTIVMGRNEFLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERMRIALDGMIVISMEIFRPKNLESLAENTLKGKIRITTRCLWLDKGKLLDALYKAAHAALSSCPVKSPLPHVERTVSEMLRKMVRKYSGKRPEVIAIAIENSGAVLADEINTKLSGKSRVGPGISTLRKVVDERRKENQSTTTQIKDDDNDIEGLLPEKDTTTSEAEGDLPDSEDTDEFWKPFIASVEKSNKANNGYVPLKEYKSNLKQDDSEDIDEAKSEEMSNAEPESSKSVKKNKWKAEEVKKLIDLRSDLHDRFKVVKGRMALWEEISQSLLADGISRSPAQCKSRWTSLVLKYEEIKNGKDGKKNWLYLEDMERILSSDKAPASN* | 868 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa5g3249 | 867 | Pfam | Beta-lactamase superfamily domain | 102 | 238 | IPR001279 | - | |
Psa5g3249 | 867 | Gene3D | - | 83 | 495 | IPR036866 | - | |
Psa5g3249 | 867 | MobiDBLite | consensus disorder prediction | 740 | 773 | - | - | |
Psa5g3249 | 867 | PANTHER | RIBONUCLEASE J | 1 | 863 | - | - | |
Psa5g3249 | 867 | MobiDBLite | consensus disorder prediction | 35 | 61 | - | - | |
Psa5g3249 | 867 | ProSiteProfiles | Myb-like domain profile. | 768 | 832 | IPR001005 | - | |
Psa5g3249 | 867 | SUPERFAMILY | Metallo-hydrolase/oxidoreductase | 79 | 493 | IPR036866 | - | |
Psa5g3249 | 867 | MobiDBLite | consensus disorder prediction | 741 | 773 | - | - | |
Psa5g3249 | 867 | SMART | sant | 772 | 834 | IPR001005 | - | |
Psa5g3249 | 867 | CDD | RNaseJ_MBL-fold | 82 | 493 | - | - | |
Psa5g3249 | 867 | Gene3D | - | 776 | 837 | - | - | |
Psa5g3249 | 867 | PANTHER | RNA-METABOLISING METALLO-BETA-LACTAMASE | 1 | 863 | - | - | |
Psa5g3249 | 867 | Gene3D | - | 280 | 430 | IPR042173 | - | |
Psa5g3249 | 867 | MobiDBLite | consensus disorder prediction | 668 | 703 | - | - | |
Psa5g3249 | 867 | CDD | GT1 | 774 | 839 | - | - | |
Psa5g3249 | 867 | Pfam | Myb/SANT-like DNA-binding domain | 774 | 857 | IPR044822 | - | |
Psa5g3249 | 867 | SMART | Lactamase_B_5a | 91 | 288 | IPR001279 | - | |
Psa5g3249 | 867 | SUPERFAMILY | Homeodomain-like | 770 | 834 | IPR009057 | - | |
Psa5g3249 | 867 | MobiDBLite | consensus disorder prediction | 668 | 712 | - | - | |
Psa5g3249 | 867 | MobiDBLite | consensus disorder prediction | 42 | 61 | - | - | |
Psa5g3249 | 867 | Pfam | Zn-dependent metallo-hydrolase RNA specificity domain | 430 | 482 | IPR011108 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa5g3249 | Psa-Chr5 | 254765676 | 254777143 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa5g3249 | 775 | 860 | Trihelix Transcription Factor Family | AT2G38250 | 31.818 | 7.67e-09 | 56.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | Trihelix | Psa5g3249 | Lactamase_B_2 | 3e-10 | CL0381 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa5g3249 | - | - | gmx:100783850 | 1416.36 |