Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3249 ATGGCCGCTCTCACGTCTCTCCCTCCCCTTCCTCACACTCTCCTCTTTCTCCGCTCAAAACCAACCAGACTTTCCGTTTCCGCTTCCGCTTCAGCGCTCTCAGTAGGTAATGATGGATCTAGTTCTAGAGTACCTCACAAGAGAAGAGGAAGAATCGAAGGTCCACGGAAAAGTATGGAAGATTCTGTTCAACGCAAGATGGAGCAGTTTTATGAAGGTTCCGATGGACCGCCTTTGCGCGTTCTACCTATTGGTGGTTTAGGTGAAATTGGAATGAATTGTATGCTTGTAGGGAATCATGACCGATATATCCTCATTGATGCCGGTATCATGTTTCCTGATTATGATGACCTTGGAGTACAAAAGATTATACCTGATACAACTTTTATAAAAAAATGGAGCCACAAAATTGAAGCGGTTATTATAACGCATGGTCATGAAGATCATATCGGTGCGTTGCCTTGGGTCATCCCAGCATTGGATTCGAATACACCGATTTTTGCATCTTCCTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAGCATGGTCTTTTTCTTCCATCTAGACTCAAAATCTTTAGAACAAAGAACAAGTTTGTTGCCGGTCCATTTGAAATAGAACCTATTAGGGTGACTCATTCTATTCCTGACTGTTGTGGACTAGTTCTTCGTTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGACGAGACACCGCTTGATGGGAAGGTGTTCGATCGAGAGGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTGCTCTCGCCCGGAAGGACAACCAGTGAATCTGTTGTAGCAGATGCATTACTGAGGCATATTTCAGCTTCTAAAGGAAGGGTCATTACAACCCAGTTTGCATCAAATCTACATCGGATTGGAAGTGTGAAGGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTATTGGTATGTCCTTAAGGACATACTTAGAAGCAGCTTGGAAGGATGGAAAGGCGCCTTTTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCACCCAAGGATCTGCTTATTGTAACAACCGGCTCTCAAGCAGAGCCACGTGCTGCCTTAAATCTTGCATCTTATGGAAGTAGCCATTTTTTCAAACTTACCAAGGAAGATATTATTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTGATGGAAATGATGAATCGCATATCAGAGATTGGATCAACAATAGTTATGGGGAGAAATGAATTCTTGCACACATCTGGTCATGCATATCGTGGAGAATTAGAGGAAGTACTTAGAATAGTGAAGCCGCAACATTTTCTTCCTGTACATGGAGAATATTTGTTCCTGAAGGAGCATGAATCACTTGGAAAATCAACTGGCATTCGGCATACTGCTGTTATAAAGAACGGAGAGATGCTTGGGGTTTCACACTTGAGAAATAGAAGGGTTCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGCGACAAAGCATTTGGTACATCTAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATGATTGTGATTAGCATGGAAATATTTCGCCCTAAAAACTTAGAAAGTTTGGCTGAAAACACCTTGAAAGGGAAGATAAGGATTACTACGAGATGCCTATGGCTAGACAAAGGGAAGCTGTTAGATGCACTTTATAAAGCTGCTCATGCAGCGCTTTCTAGCTGTCCCGTTAAAAGCCCACTGCCTCACGTGGAAAGAACTGTGTCTGAGATGTTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCCGAAGTAATTGCCATTGCCATAGAAAACTCTGGAGCTGTTTTGGCGGATGAGATAAACACAAAATTGTCTGGCAAGTCCCGTGTTGGTCCTGGAATATCAACATTAAGAAAGGTAGTGGATGAACGTAGAAAGGAAAACCAATCCACCACAACACAAATAAAAGATGATGACAATGATATTGAAGGGCTATTACCTGAGAAAGACACCACTACAAGTGAAGCTGAGGGTGATTTACCCGATTCAGAGGATACAGATGAATTTTGGAAACCATTTATTGCATCAGTTGAGAAATCAAATAAGGCTAACAATGGTTATGTTCCACTAAAGGAGTATAAGTCCAATCTGAAGCAAGATGATTCTGAAGACATTGATGAAGCCAAGTCTGAAGAAATGTCTAATGCTGAGCCAGAATCATCAAAATCAGTAAAGAAAAATAAATGGAAAGCTGAGGAAGTTAAAAAGCTGATTGATTTGCGGAGTGACCTCCATGACAGATTTAAAGTTGTGAAGGGAAGGATGGCTCTCTGGGAAGAGATATCTCAGAGCTTGTTGGCTGATGGGATCAGTAGAAGTCCTGCACAATGCAAATCTCGGTGGACATCTTTGGTACTGAAATATGAGGAGATCAAGAATGGGAAGGATGGCAAAAAAAATTGGCTATATCTTGAAGACATGGAAAGGATATTGTCTAGTGACAAAGCACCGGCATCAAATTGA 2604 0.4128 MAALTSLPPLPHTLLFLRSKPTRLSVSASASALSVGNDGSSSRVPHKRRGRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRVLPIGGLGEIGMNCMLVGNHDRYILIDAGIMFPDYDDLGVQKIIPDTTFIKKWSHKIEAVIITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIKKRLKEHGLFLPSRLKIFRTKNKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRHISASKGRVITTQFASNLHRIGSVKAAADLTGRKLVFIGMSLRTYLEAAWKDGKAPFDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHFFKLTKEDIILYSAKVIPGNESRVMEMMNRISEIGSTIVMGRNEFLHTSGHAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFIDERMRIALDGMIVISMEIFRPKNLESLAENTLKGKIRITTRCLWLDKGKLLDALYKAAHAALSSCPVKSPLPHVERTVSEMLRKMVRKYSGKRPEVIAIAIENSGAVLADEINTKLSGKSRVGPGISTLRKVVDERRKENQSTTTQIKDDDNDIEGLLPEKDTTTSEAEGDLPDSEDTDEFWKPFIASVEKSNKANNGYVPLKEYKSNLKQDDSEDIDEAKSEEMSNAEPESSKSVKKNKWKAEEVKKLIDLRSDLHDRFKVVKGRMALWEEISQSLLADGISRSPAQCKSRWTSLVLKYEEIKNGKDGKKNWLYLEDMERILSSDKAPASN* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3249 867 Pfam Beta-lactamase superfamily domain 102 238 IPR001279 -
Psa5g3249 867 Gene3D - 83 495 IPR036866 -
Psa5g3249 867 MobiDBLite consensus disorder prediction 740 773 - -
Psa5g3249 867 PANTHER RIBONUCLEASE J 1 863 - -
Psa5g3249 867 MobiDBLite consensus disorder prediction 35 61 - -
Psa5g3249 867 ProSiteProfiles Myb-like domain profile. 768 832 IPR001005 -
Psa5g3249 867 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Psa5g3249 867 MobiDBLite consensus disorder prediction 741 773 - -
Psa5g3249 867 SMART sant 772 834 IPR001005 -
Psa5g3249 867 CDD RNaseJ_MBL-fold 82 493 - -
Psa5g3249 867 Gene3D - 776 837 - -
Psa5g3249 867 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 863 - -
Psa5g3249 867 Gene3D - 280 430 IPR042173 -
Psa5g3249 867 MobiDBLite consensus disorder prediction 668 703 - -
Psa5g3249 867 CDD GT1 774 839 - -
Psa5g3249 867 Pfam Myb/SANT-like DNA-binding domain 774 857 IPR044822 -
Psa5g3249 867 SMART Lactamase_B_5a 91 288 IPR001279 -
Psa5g3249 867 SUPERFAMILY Homeodomain-like 770 834 IPR009057 -
Psa5g3249 867 MobiDBLite consensus disorder prediction 668 712 - -
Psa5g3249 867 MobiDBLite consensus disorder prediction 42 61 - -
Psa5g3249 867 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 430 482 IPR011108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3249 Psa-Chr5 254765676 254777143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3249 775 860 Trihelix Transcription Factor Family AT2G38250 31.818 7.67e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa5g3249 Lactamase_B_2 3e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3249 - - gmx:100783850 1416.36