Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3225 ATGGGAAGGTCCCCATGTTGTGATGAAAATGGCCTTAAGAAAGGACCATGGACTACTGAAGAAGATCAAAAGCTTGTTGAACACATTCAACAACATGGCCATGGAAGTTGGAGAGCACTCCCTAAGCTAGCAGGTCTTAATAGATGTGGAAAGAGTTGTAGACTAAGGTGGACAAATTATTTAAGGCCCGATATTAAGAGAGGAAAATTTTCTCAAGAAGAAGAACAAACAATTCTTCATCTTCATTCAATCCTCGGAAACAAATGGTCTGCAATTGCGACGCATCTACCCGGAAGAACAGATAACGAGATAAAGAACTTCTGGAACACGCATTTAAAGAAAAAGTTGATTCAAATGGGTTTCGATCCAATGACTCACCAACCAAGAACCGATCTTGTTTCCACTTTGCCATATCTACTAGCTTTAGCAAACATGACAGATCTTATGGATCATCATCAGTCATCATCATGGGATGCAATGAGTAGTTTACAAGCAGATGCAGTTCATGTTGCGAAACTTCAATGCCTTCATTATTTACTCCAATCTTCAAATATTAATAATTCATATGACCAAAATGCCATCAGCATCACAAACATGGAACAACAACAACAACAACAACCTTTATCTAATGTGAAACAAAACATAATAATTGATGCTGATAGTACTCCTGCAGCCTCATTTTCTCAACCACTCCCCCACCAAAGTATGATACCTCAACACTTTTTAGACCCACCACAAGTCTCTTTCAGTTCACAATCATGTTTGAATAACGAACAGGGTCAAAATGGTACTATTACAAACTTTGCAACAGTTGATGAAACATCATGGATTAATAATGTTCCATGTTCTGCTCCAATATCAATTGTTCCTCCAGATGCCAGCAGCAGCACTTCTAGCTATGGAGGAGGAGTAGGAGGACCATCTGCAACAGCTTATTGGTCGGAACTTTTTTTTGAGGACACTATTCTGCATGACTTATCTTAG 984 0.3892 MGRSPCCDENGLKKGPWTTEEDQKLVEHIQQHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALANMTDLMDHHQSSSWDAMSSLQADAVHVAKLQCLHYLLQSSNINNSYDQNAISITNMEQQQQQQPLSNVKQNIIIDADSTPAASFSQPLPHQSMIPQHFLDPPQVSFSSQSCLNNEQGQNGTITNFATVDETSWINNVPCSAPISIVPPDASSSTSSYGGGVGGPSATAYWSELFFEDTILHDLS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3225 327 CDD SANT 69 112 IPR001005 -
Psa5g3225 327 CDD SANT 16 61 IPR001005 -
Psa5g3225 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Psa5g3225 327 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Psa5g3225 327 Gene3D - 13 66 - -
Psa5g3225 327 Gene3D - 69 116 - -
Psa5g3225 327 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Psa5g3225 327 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 317 - -
Psa5g3225 327 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Psa5g3225 327 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Psa5g3225 327 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Psa5g3225 327 Coils Coil 323 327 - -
Psa5g3225 327 SMART sant 13 63 IPR001005 -
Psa5g3225 327 SMART sant 66 114 IPR001005 -
Psa5g3225 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Psa5g3225 327 PANTHER TRANSCRIPTION FACTOR MYB39-LIKE 1 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3225 Psa-Chr5 252397683 252399398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3225 1 327 MYB Transcription Factor Family AT1G34670 51.330 2.74e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g3225 Myb_DNA-binding 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3225 K09422 - gmx:100782792 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3225 5 252397683 252399398 Psa5g3225 5 252397683 252399398 ECH