Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3213 ATGACTCAAGATCTTGAGATGAAAGATCGTTCAACTCCTTCCAACTCCGTTTCTCCACCGATTCCATCTACTTTGCAGCATTTGAAGGTGCTCATCGAGACCGGTTCGTACTCTAAGGAAGTTCGTAGAATTGCTCGTGCTGTTCGTCTTACAATTGCATTGAGACGGAAATTGACAGCTTCTGTTATCACAAGAACTGTGGATGTTACTTGGCATCGAACGCCGGAATCCAAAACCGATGAAGCCCTTTGGATTCCAAGATGTAATGTTAAGTTAAACACCAATTTGCGAATGGAAGATCGTTTGGATCCAACTCCACGGCTCAGATTCCGTGCGCGGTGGATTTCAGAGAATCGCAGGTATGCTTCTCTCCTCTTTGTGTCACTCGTTATTGATCTTATTCTTCTCAACTGTGATAGCGATTCTTCTTCTCTTCAAACTCTTCTGAACTGGTTATGGAATGCAGAGTCCATCACGCGGTGTGTATTGCTGGCAGGGATAAGTCAAAATTGGACCTTAGCTGGCAGTTCACTGGATTTGCACTACTTCTATAAGCTTCGTGTCGGTAATTCATTTAGCTATGGGAGTGGTGTATTGTTTGCTCTTGAGCCATTCTTTAATGCTGCTGCTTCACAATTTATACTTGGACAATCAATTCCCATCACTCTATGGCTCTCATTGGCTCCTGTTGTTATCGGTGTGTCAATGGCATCATTGACTGAACTCTCATTCAACTGGCTTGGCTTCATAAGTGCTATGATTTCAAACATTTCCTTTACATACAGGAGTATCTACTCAAAGAAAGCCATGCGACCATGTATCCTTGAGTTTGACGGTGCATCCAGTGGAAATCCTGGAAAGTCTGGTGCAGGAGCTGTATTGCGTTCTGGGAATGAGGTCCATCGCTACAGTAAAGGACTGGGGACTCAAACAAATAACTCTGCCGAATATCACGGTTTACTTTTGGGATTGAAAGAAGCTAGTAACAAAGGGTATGATCATGTTGAAGTCCGAGGTGATTCTAAGCTTGTTTGCGAACAG 1041 0.4352 MTQDLEMKDRSTPSNSVSPPIPSTLQHLKVLIETGSYSKEVRRIARAVRLTIALRRKLTASVITRTVDVTWHRTPESKTDEALWIPRCNVKLNTNLRMEDRLDPTPRLRFRARWISENRRYASLLFVSLVIDLILLNCDSDSSSLQTLLNWLWNAESITRCVLLAGISQNWTLAGSSLDLHYFYKLRVGNSFSYGSGVLFALEPFFNAAASQFILGQSIPITLWLSLAPVVIGVSMASLTELSFNWLGFISAMISNISFTYRSIYSKKAMRPCILEFDGASSGNPGKSGAGAVLRSGNEVHRYSKGLGTQTNNSAEYHGLLLGLKEASNKGYDHVEVRGDSKLVCEQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3213 347 Gene3D - 264 347 IPR036397 GO:0003676
Psa5g3213 347 MobiDBLite consensus disorder prediction 1 20 - -
Psa5g3213 347 ProSiteProfiles RNase H type-1 domain profile. 269 347 IPR002156 GO:0003676|GO:0004523
Psa5g3213 347 Pfam Reverse transcriptase-like 277 347 IPR002156 GO:0003676|GO:0004523
Psa5g3213 347 PANTHER BNAC02G47130D PROTEIN 199 270 - -
Psa5g3213 347 CDD RNase_HI_like 273 347 - -
Psa5g3213 347 Pfam Triose-phosphate Transporter family 198 271 IPR004853 -
Psa5g3213 347 PANTHER SOLUTE CARRIER FAMILY 35 199 270 - -
Psa5g3213 347 SUPERFAMILY Ribonuclease H-like 270 346 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3213 Psa-Chr5 250138344 250142772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3213 201 270 Antiporters AT5G46110 94.286 2.43e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3213 K15283 - han:110890712 137.887