Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3206 ATGAGAGGAACGCTTAAGGATGTAGCAAGAAATTTCCCTACCGCCATAGTGACAGGAAGGTGCAGAGACAAGGTATTTAACTTCGTAAAATTGGCGGAGTTGTACTATGCAGCAAGCCATGGTATGGACATCATGGGACCAACAAAAAACCAAACTACTGCAAAAAGTAAAAGTGATAGTAATAACAAAGCAGTGTTGTTTCAACCAGCAAGTCAGTTCCTACCAATGATCGATGAAGTGTATAAAATTTTGTTAGAAAAAACAAAATCTGTCCCGGGAGCTATGGTAGAAAACAACAAATATTGCTTATCCGTGCACTTTCGTTGTGTTGATGAAAAGAGTTGGGCTCCTTTGGCTGAGAAAGTAAGATTAGTACTTAATGAATATCCAAAACTTAGATTAACACAAGGAAGAAAAGTGTTGGAGATTCGTCCCACTATCAAATGGGACAAAGGAAAAGCTCTTGAGTTTTTGTTGGAATCGTTAGGATATGAGAATTCTAATGATGTTTTCCCAATCTACATCGGTGATGATCGAACTGATGAGGATGCTTTTAAGGTTTTGAGTAGAAGAGGTCAAGGGGTTGGGATTCTTGTTTCTAGTGTTCCAAAAGAAACAGACGCTTCCTACACACTGCAAGATCCATCAGAGGTTGAGAATTTTTTGCGGCGATTGGTGGAATGGAAAAGATTGAGTAGTGTGAACCCCACAAGTGCATATAGAGTTGTAGATTAA 735 0.3905 MRGTLKDVARNFPTAIVTGRCRDKVFNFVKLAELYYAASHGMDIMGPTKNQTTAKSKSDSNNKAVLFQPASQFLPMIDEVYKILLEKTKSVPGAMVENNKYCLSVHFRCVDEKSWAPLAEKVRLVLNEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYENSNDVFPIYIGDDRTDEDAFKVLSRRGQGVGILVSSVPKETDASYTLQDPSEVENFLRRLVEWKRLSSVNPTSAYRVVD* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3206 244 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE C-RELATED 1 234 - -
Psa5g3206 244 TIGRFAM T6PP: trehalose-phosphatase 3 226 IPR003337 GO:0003824|GO:0005992
Psa5g3206 244 Gene3D - 1 70 IPR023214 -
Psa5g3206 244 Gene3D - 82 238 IPR023214 -
Psa5g3206 244 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 234 IPR044651 GO:0004805|GO:0005992
Psa5g3206 244 SUPERFAMILY HAD-like 4 228 IPR036412 -
Psa5g3206 244 Pfam Trehalose-phosphatase 1 216 IPR003337 GO:0003824|GO:0005992
Psa5g3206 244 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 2 191 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3206 Psa-Chr5 249682581 249684229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3206 16 227 Trehalose Biosynthesis Gene Families AT1G06410 24.107 9.42e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3206 K01087 - gmx:100788641 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1703 2 140001531 140004143 Psa5g3206 5 249682581 249684229 PCT