Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3197 ATGGCAGCTATGATGAATTTATACAATAACATACAACTTCGCTTAGATCCATATTCAGATCCTTTTAGAGGTGAATTAATGGAAGTTCTTGAACCTTTTATCAAAAGTCCTTCTCCGAATTCAACACCATCACCTTCTTCTTCTTCTTCTTTCCATTCTTTCTACAATGATGGTTGTTCAACATCGATGACCCATGGATTTACCAACGGGTTATCGAATAGCCAGAACTTCATAGGCTTTGTTCAACAACCATCTTCTTCTTCTCTTCTTGGTCTTAACCATTTGACCCCATCTCAAATCAACCAGATCCAAGCACAAATCCAACACCAAAACTTTACCTTGCAACAACATCAACAACAGCAACGTCTCAGTAACACTCTTAGCTTCCTCAGTCCGAAGCCAATCCCTATGAAGCACGTGGGTAATACTCCTTCAAAACCCACGAAGCTATACAGAGGGGTGAGGCAAAGGCACTGGGGAAAATGGGTTGCTGAGATCAGACTCCCTAAGAATCGAACCAGGCTTTGGCTTGGTACCTTTGATACAGCAGAAGAAGCTGCTTTGGCTTATGACAAAGCTGCTTATAAGCTTCGTGGTGACTTTGCTAGGCTTAATTTCCCGAATCTCAAACACCAAGGTTCATGTATTGGTGTCGGTGAGTTTGGTGAGTATAAACCTCTTCCTTCCTCGGTTGATGCTAAACTTCAAGCTATTTGTGAAGGTTTAGCTGAGATGCAGAAACAGGGGAAGTCAGAGAAGCCTAAAAAAACACCAGCGGCTCGGTCCAAAGCTGCGTCGAAGGTGGTACCTTCGCCGGAGACGGTGGAGAAGTCTGTTGATGATTTGGAGAAGGGTTCTGGTTCAGTTTCAGAAGGGTGTTGTAAGGTTGAAGCTTCGATTTCTCCGGTGATGACCGAGACCGAGAGTGAAGGTTCTTCACCACTTTCAGTTCTTACTTTTGGTGATGTTGGTGAACCACAGTGGGAAGGTGATTCGGAAAATTTTAATTTGCTGAAGTACCCCTCTTATGAGATTGATTGGGATTCTCTGTGA 1053 0.4349 MAAMMNLYNNIQLRLDPYSDPFRGELMEVLEPFIKSPSPNSTPSPSSSSSFHSFYNDGCSTSMTHGFTNGLSNSQNFIGFVQQPSSSSLLGLNHLTPSQINQIQAQIQHQNFTLQQHQQQQRLSNTLSFLSPKPIPMKHVGNTPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPNLKHQGSCIGVGEFGEYKPLPSSVDAKLQAICEGLAEMQKQGKSEKPKKTPAARSKAASKVVPSPETVEKSVDDLEKGSGSVSEGCCKVEASISPVMTETESEGSSPLSVLTFGDVGEPQWEGDSENFNLLKYPSYEIDWDSL* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3197 350 Gene3D AP2/ERF domain 150 208 IPR036955 GO:0003700|GO:0006355
Psa5g3197 350 Coils Coil 100 120 - -
Psa5g3197 350 SMART rav1_2 150 213 IPR001471 GO:0003700|GO:0006355
Psa5g3197 350 CDD AP2 149 209 IPR001471 GO:0003700|GO:0006355
Psa5g3197 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 349 - -
Psa5g3197 350 MobiDBLite consensus disorder prediction 245 284 - -
Psa5g3197 350 PRINTS Ethylene responsive element binding protein signature 151 162 IPR001471 GO:0003700|GO:0006355
Psa5g3197 350 PRINTS Ethylene responsive element binding protein signature 173 189 IPR001471 GO:0003700|GO:0006355
Psa5g3197 350 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 4 349 - -
Psa5g3197 350 ProSiteProfiles AP2/ERF domain profile. 150 207 IPR001471 GO:0003700|GO:0006355
Psa5g3197 350 SUPERFAMILY DNA-binding domain 150 207 IPR016177 GO:0003677
Psa5g3197 350 Pfam AP2 domain 151 199 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3197 Psa-Chr5 248920582 248923320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3197 1 350 AP2-EREBP Transcription Factor Family AT1G78080 52.533 3.83e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Psa5g3197 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3197 K09286 - gmx:732559 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3197 5 248920582 248923320 Psa5g3197 5 248920582 248923320 ECH
Psa2g1710 2 140940106 140942166 Psa5g3197 5 248920582 248923320 PCT