Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3168 ATGTCATCGTCGTCGTCATCATCATCGTCGAATCACTCTCCTCCGTGTGCAGCGTGCAAGATTCAGCGAAGAAAATGCACACAAGAATGCATTTTCAAACCTTATTTTCCTTCAAACAATCCTCAAAAGTTTCTCTACGTACACAAAGTCTTCGGCGCTAGTAACGTCGCAAAGCTACTCAATGAGGTGACTGAGTCGCAACGTGAAGACACTGTGAGTTCTCTCGCTTATGAAGCAGAAGCGCGTTTGAGGGATCCTGTTTATGGTTGCGTCGGTCTTATTTCGTCGCTTCAGAATAAACTCAAAAGCGTGCAGAATGAACTGAATGATGCAAAGAAGAATCTTGCTTCTTATATAGGTCCCCAGGCTTATCTGCCTTCTCCGCCTTCTCCGCCGCTTCCTCCGGCAATGGTGAATCCTTTTTATACTCAGCAACAGCGTCAAGATGTTGATTTTACCTATAATGGTTGTGATGATAACTCGTATTCTAACTTTCAAGCGCAATCTTTTCATCATCCGGTAATGGTTTCTTCACAACAGCTACAACAAAACACGTTTTGCTCCAAGAAGGTTTTCAAGACCGAAAGACAAAACCTTGAATAG 603 0.4328 MSSSSSSSSSNHSPPCAACKIQRRKCTQECIFKPYFPSNNPQKFLYVHKVFGASNVAKLLNEVTESQREDTVSSLAYEAEARLRDPVYGCVGLISSLQNKLKSVQNELNDAKKNLASYIGPQAYLPSPPSPPLPPAMVNPFYTQQQRQDVDFTYNGCDDNSYSNFQAQSFHHPVMVSSQQLQQNTFCSKKVFKTERQNLE* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3168 200 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Psa5g3168 200 Coils Coil 94 114 - -
Psa5g3168 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 12 190 - -
Psa5g3168 200 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Psa5g3168 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3168 Psa-Chr5 246994034 246994993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3168 1 126 AS2 family AT5G66870 69.841 1.67e-58 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa5g3168 LOB 1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3168 - - ccaj:109810786 189.504