Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3162 ATGGACATATATGAGCCATTCCAACAAGTTAGCATGTGGGGTGATAGCTTTAAAGTTGAAAGTGGTTTGAGTTCAGTTGCTTCTTCACCAATGTTAATGGTGAACACTACTAGCATAGAGAACAAGAGTGAATATGTTCCTCATGAACCAAGAGAGTCTTCTGGAGCTGATCAAGAGACTACAGATACTAAGGTGCTAAGACGACTCGCACAGAATCGCGAGGCTGCTAGGAAAAGTCGATTGCGCAAAAAGGCTTATGTTCAACAATTAGAAACAAGCAGATTGAAGCTGATGCAACTGGAGTTGGAGATTGGAAGAGCAAGAAAGCAGTTGCAGGGTATGTGCAATGGAAATTCATTAGATACAAATTTTATGGGATCATCTGAGACAATAAATCCAGGAATTGTCGCGTTTGAAATTGAATATGGAAATTGGGTCGACGAGAGTCATAGGCGAAACAATGAGCTCAGAAGTGTATTTCAAGGGAACGCGCCTGAAGTGCAGCTTGGTCACTGTGTTCAGAATGTCTTGGATCATTACGCGGATCTTTTTCGAATGAAAGCAGACGCTGCGAAGGCTGATGTGCTTTATTTAATCTCGGGCGTATGGAAAGCATCGGCCGAACGCCTTTTCCTATGGATCGGAGGGTCACGCCCGTCACAGCTTCTAAATCTAATCGTGCCGCAGCTTGAGCTATTGACCGATCCACAAATCGCTAGCATAAAAAAGCTTTGTCTGTGTTCTCAGCAAGCTGAAGATGCTCTTTCGCAAGGACTCGATAAACTCCAGCAGAGTCTTGTACAAGACATGTCAGTTGATCCATTCAGTGCAGTAAATCATGGAATGCAGATGGCTTTTGCTATAGGAAAATTCGAAGCATTGGAAGGTTTTGTAGCCCAGGCAGATCACCTTAGGCAGCAAACTCTGATACACATGTCGCGAATCCTGTCTACTCGTCAAGCGGCTAGAGGCTTGATTGCTCTCGGGGAATATTTTCATCGTCTTCGAACTCTTTGTTCTCTTTGGACTTCTCGTCCTTGTAACTCGATGATATCGCCTAAGATTAGTCCTTAG 1074 0.4395 MDIYEPFQQVSMWGDSFKVESGLSSVASSPMLMVNTTSIENKSEYVPHEPRESSGADQETTDTKVLRRLAQNREAARKSRLRKKAYVQQLETSRLKLMQLELEIGRARKQLQGMCNGNSLDTNFMGSSETINPGIVAFEIEYGNWVDESHRRNNELRSVFQGNAPEVQLGHCVQNVLDHYADLFRMKADAAKADVLYLISGVWKASAERLFLWIGGSRPSQLLNLIVPQLELLTDPQIASIKKLCLCSQQAEDALSQGLDKLQQSLVQDMSVDPFSAVNHGMQMAFAIGKFEALEGFVAQADHLRQQTLIHMSRILSTRQAARGLIALGEYFHRLRTLCSLWTSRPCNSMISPKISP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3162 357 MobiDBLite consensus disorder prediction 39 62 - -
Psa5g3162 357 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 112 IPR004827 GO:0003700|GO:0006355
Psa5g3162 357 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700|GO:0006355
Psa5g3162 357 Coils Coil 83 110 - -
Psa5g3162 357 ProSiteProfiles DOG1 domain profile. 135 345 IPR025422 GO:0006351|GO:0043565
Psa5g3162 357 PANTHER TRANSCRIPTION FACTOR TGA9 1 349 - -
Psa5g3162 357 Pfam bZIP transcription factor 63 93 IPR004827 GO:0003700|GO:0006355
Psa5g3162 357 SMART brlzneu 60 120 IPR004827 GO:0003700|GO:0006355
Psa5g3162 357 Pfam Seed dormancy control 154 227 IPR025422 GO:0006351|GO:0043565
Psa5g3162 357 SUPERFAMILY Leucine zipper domain 64 100 IPR046347 GO:0003700|GO:0006355
Psa5g3162 357 MobiDBLite consensus disorder prediction 44 62 - -
Psa5g3162 357 Gene3D - 63 116 - -
Psa5g3162 357 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3162 Psa-Chr5 246670970 246673284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3162 1 346 Calmodulin-binding Proteins AT1G22070 53.005 5.30e-128 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Psa5g3162 DOG1 5.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3162 K14431 - gmx:100794268 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa2g1774 2 145608540 145611737 Psa5g3162 5 246670970 246673284 PCT