Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3161 ATGAACCGTCAAGTGCTACCACCGTTGCCGAAGAATGCTAGCACGGTGGATCCTAAAATCTGGCGAGCGATCGCCGGTGCCGCCGTGCATATCCCCGCCGTTAATTCTAGGGTTTACTACTTTCCTCAAGGACATATGGACCAAGCTTCTTCTCCTCCTAACAATCTTTCTCCTCGACTACTCTCCAGGCCTTACATTCTCTGTTCTGTTTCTGCCGTTCATTTTCTTGCCGATCCGAAAACCGATGAGGTTTTTGCGAAACTGTTTCTTCAGCCTCTCAATGATTTCGCTGCCATTTTCCCTCGTGTTCCTGCTCCCGAAGTTGACGACGGTGAGAGGATTTTCTCGTTTGCGAAGATTCTCACTCCTTCGGATGCTAACAACGGAGGTGGATTCTCTGTTCCGAGGTTTTGCGCTGATTCGATTTTCCCGCCTCTTGACTATAGTATGGACCCTCCGTATCAGTCTCTTGTGATTACCGACGTGCACGGCATTGCTTGGGAGTTTCGTCACATTTACCGTGGCACCCCGAGGCGGCATCTGCTTACCACCGGTTGGAGTAGGTTTGTTAACGGGAAGAAGCTCGTTGCCGGTGATTCCGTTGTTTTCATGAAGAATACCAGAGGCAACATGTTCATAGGGATCCGCCGTGCTGTCCGTTTTGTTCCGGCTCGGAGTGCTAATGACGCAACGAGACTGTGCCTTCCGATCTGCGGGGTGAGAAACAGGGTGGATGATGAAGATAATGAGGAAAAACAGGTGGAAGAGAAGTGTAGAGAAGAGTTTTCGAGGAATGGGAAAGGGAAGTTGTCTCCGAGATCGGTTGCGGAGGCAGCGGAATTGGCGGCGCAGGGATTGGCATTTGAAGTCGTGTATTATCCGAAAGCTGGTTGGTCAGATTTTGTGCTGAAAGCTGAGGTTGTGGATGTAGCAATGAGTGTTACGTGGTGTCCTGGAATGAGAGTCAAAATGGCTGTGGAGACTGATGATTCCTCCCGGACTACATGGTTTCAGGGTGTAGTGTCTTCCGTCTCTGTTCCTGATCATGGCCCTTGGGGAGGTTCGCCTTGGCGTATGCTTCATATTACATGGGATGAACCTGAAGTGTTGCAAACTTCCAAGTGGGTCAGCCCTTGGCAGATTGAACTTCTTTCGACAACACCTACACTTCATACACCATTTCCCTCAATAAAAAGGCTTAGAGGCCCCCCTGGGGTGTTAACTGATGGAGACCCCTTTTCTATCACAGCATTCACTAATTCAACAATGGGACAATTGAATCAATCGTTGTTGAGTTACGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGTTTCAAGTTTTTCCAACTTTCCAGGTGAAATCCCCCGTCTGTGTATGAGTAACTCCTTTGGCAACAACGCAGTGCTGGGGTTGAAATCTTTGTCAACTGAGCTAAATGTTGGCAGTTCTCAATCTGATGATTTGTCACCAGAGAGCCAGAGTAGTTTGCCTTCCTTTGGCACAGATTTTGTCCGGAACTACAACTGCAACTCAATGAAACCCGGGCCTGTATCGTTTCAGCTATTTGGGGTAGTCATTCAGTCAGAACAGCCTGTTGAAAGTGGTTCGAATGGTACTGGTAGCCCAGGAGATGATAGCAGTAAGGGCTGCAATGAAACTGAAGGCATGAACAACCCTCTTGAGGATTCTTTGATTTACTCAAAATTGCTTGACAGACTTGATGGCCAGTGCCAAATAGCCTCAACTGCCGAGGCATGCTATTTGTGA 1785 0.484 MNRQVLPPLPKNASTVDPKIWRAIAGAAVHIPAVNSRVYYFPQGHMDQASSPPNNLSPRLLSRPYILCSVSAVHFLADPKTDEVFAKLFLQPLNDFAAIFPRVPAPEVDDGERIFSFAKILTPSDANNGGGFSVPRFCADSIFPPLDYSMDPPYQSLVITDVHGIAWEFRHIYRGTPRRHLLTTGWSRFVNGKKLVAGDSVVFMKNTRGNMFIGIRRAVRFVPARSANDATRLCLPICGVRNRVDDEDNEEKQVEEKCREEFSRNGKGKLSPRSVAEAAELAAQGLAFEVVYYPKAGWSDFVLKAEVVDVAMSVTWCPGMRVKMAVETDDSSRTTWFQGVVSSVSVPDHGPWGGSPWRMLHITWDEPEVLQTSKWVSPWQIELLSTTPTLHTPFPSIKRLRGPPGVLTDGDPFSITAFTNSTMGQLNQSLLSYGTFPAGMQGARHDLFSVSSFSNFPGEIPRLCMSNSFGNNAVLGLKSLSTELNVGSSQSDDLSPESQSSLPSFGTDFVRNYNCNSMKPGPVSFQLFGVVIQSEQPVESGSNGTGSPGDDSSKGCNETEGMNNPLEDSLIYSKLLDRLDGQCQIASTAEACYL* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3161 594 MobiDBLite consensus disorder prediction 537 557 - -
Psa5g3161 594 Gene3D - 316 389 - -
Psa5g3161 594 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 12 593 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa5g3161 594 SUPERFAMILY DNA-binding pseudobarrel domain 113 228 IPR015300 -
Psa5g3161 594 CDD B3_DNA 115 217 IPR003340 GO:0003677
Psa5g3161 594 Gene3D - 114 219 IPR015300 -
Psa5g3161 594 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Psa5g3161 594 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Psa5g3161 594 PANTHER AUXIN RESPONSE FACTOR 12 593 - -
Psa5g3161 594 Pfam Auxin response factor 278 360 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa5g3161 594 SMART B3_2 117 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3161 Psa-Chr5 246030574 246035421 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3161 12 560 B3 DNA Binding Superfamily AT1G77850 47.703 3.57e-164 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa5g3161 B3 6.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3161 - - qsu:112025063 696.427