Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3155 ATGGTTAAGGCGAAGTTTCACCAGTACCGGGTCGTCGGAAGGGGTCTTCCAACGGAAACCGATGAGCACCCGAAGATTTACCGCGTGAAGCTTTGGGCAACCAATGAAGTTCGTGCCAAATCCAAATTCTGGTATTTCTTGAGGAAGTTGAAGAAGGATAAGAAAAGCAATGGACAAGTGCTGGCTATCAATGAGATCTTTGAGAAAAATCCCACAAAGATCAAAAACTATGGAATATGGTTGAGATACCAGAGTCGTACCGGTTATCACAATATGTACAAGGAATACCGTGATACTACTCTAAACGGTGCTGCTGAGACAATGTAA 327 0.4343 MVKAKFHQYRVVGRGLPTETDEHPKIYRVKLWATNEVRAKSKFWYFLRKLKKDKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAAETM* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3155 108 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 108 - -
Psa5g3155 108 Gene3D - 1 70 - -
Psa5g3155 108 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 108 IPR028877 -
Psa5g3155 108 SUPERFAMILY RplX-like 71 108 - -
Psa5g3155 108 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 108 IPR023573 GO:0003735|GO:0005840|GO:0006412
Psa5g3155 108 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Psa5g3155 108 Gene3D - 71 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3155 Psa-Chr5 245259135 245259622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3155 5 108 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 86.538 1.69e-65 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3155 K02882 K22683 qsu:112011974 210.69