LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g3147	ATGATTTTCAATAGTCAACTCAAATATAGAAGAAAAGAAAATGGAGAGCATTCAAATAGACCAATTCCACTCTTTTCTATCTTCCATTCTTACATGTCACAGTTTTGTTTTTCATCAAACTATCACACCATGAAACATTTCTTAAGTTTTTCTTTCATTGTCCTTTTGTTTGCTACTTCTGTATCTGCTTACACTTTTTCGGATCATATTTCGCCGAATTTCACTGCTTCGTATCTTCAATTCATCAGTAACACTGGCACATTCTTGTTATCTAGAAACAAAACATTCAAGGCTGCTATATACAATCCTGGCAATCAACAAACAAGTTTCTATCTATGCATCATTCATTCTGCGTCGAACGCGATCATTTGGTCTGCTAACCGCGACGCTCCCATCTCAGATTCTGATAAAATGAGGCTAACAGTCAAAGGGATAACAATTTATGGCGAAAACGGAAACTCCAAATGGTCGACACCATCGCTTAAATCACAAGTACAAAAGCTTCAACTCACTGAGATGGGAAACCTTGTGTTACTTGATCAATCCAATGAATCTCTTTGGGAGAGTTTCGACCATCCAACCGATACTATCGTTATCGGACAACGTTTATCGGCCGGATCATCATTGTCTAGTGCTTCTTCCAGTTCAAATTTGTCAACAGGAAATTATGTCTTGACAGTAACTTCTTCTGATGCGATTCTTCAATGGTATGGACAAACATATTGGAAGCTTTCAAGGGATTCAAAGGCTTACAAGAATTCAAACGATGATGTTGAATACATGGCAGTAAACACAACAGGTTTTTATCTCTTTGGACATAATGAAACAGTTCATGTTTATGAAGTTGGTTTATCAGTAACTAATACCCGTTTCGCGAAATTGGCTTTCAATGGCCAGTTTACAGTTAGTAGCTTTTCAGGAACAAATTTGAAGCAGGAATTTGTTGGACCAGATGATGGTTGTCAAATTCCATTAGCTTGTGGAAGGATAGGTTTATGTAATGATCACACTTTATCATCATCATCTTCATCTTCACCTGTTTGTTCTTGTCCTTCAAATTTCCATGGTGTCTCAGGTAATCTCGGTGGTTGTGTTCCGAACGATGGATCGCGTTCTATGCCATTAGCTTGTAGTAATTCTTCTACCAATAATCATAACCAATCAAATTCTTCGGTTGTTTCATTTTTGAGCATAGGCTATGGTGTGAGGTATTTTGCAAATCTTTATTCTGATCCATTTATGTATGGAGTGAATTTATCTGTTTGTGAAGGTCTTTGTTCAAGAAACTGTTCTTGCTTGGGAATTTTGTATGGAAATTCATCTGGTTCTTGTTACATGATTGAAAATGAGTTGGGATCCATTAGTAATGGAGGTGAAGTAGACATGTTAGGATTGATTAAAGCTAATAAGGTTTGGGTTGATATTGATGATGATGATGATGATGAACAAAATTCTCAAAAAGATGGATTTCCTGTTTTTGCTGCAGTGCTATTACCGTGTGGCGGAATGATTCTTTTGCTGGTTTTTGGTTTTTTTCTTCTATGGAGAAAATTCATAAAATCAAAGAGACAAGAGGTGATATTAGGGAAACAAATCTCGATCTCACGTTCTTCGGGGGACTTGGATTCGGATCCCTTCTGCATTCCTGGTTTACCGATGAGGTTTGATTACGAAGAGCTTGAGGTTGCTACTGATAATTTCAAGACTCTGGTAGGATCTGGTGCATTCGGAGTAGTGTACAAAGGTGTGCTACCTGATAAGACTATTGTAGCAGTGAAGAAAATAATCAACATTGGAATTCAAGGCAAGAAAGATTTCTTTGCCGAGATTGCTGTTATTGGAAACATTCACCATGTTAATTTGGTTAGACTCAAAGGCTTCTGTGCTCAACGAGGACACCGAATGTTGGTCTACGAGTACATGAACCGCGGTTCACTCGACAAGAACCTCTTCGGCGGTGGTGGACAACCGGTTTTGGAATGGCAAGAGAGATTAGACGTTGCACTTGGAACAGCGCGCGGACTTGCTTATCTTCATAGCGGATGTGAGAAAAAGATAATTCACTGTGATATCAAACCAGAGAATATTCTTCTGCATGATCAATTTCAAGCTAAGATATCTGATTTCGGGCTTTCGAAGCTTCTTAGTCCTGAACAATCTGGTTTATTCACAACAATGCGAGGAACTCGCGGTTATCTTGCTCCGGAATGGCTAACAAACTCGGCAATATCTGAAAAAACTGATGTATATAGTTATGGAATGGTGCTTCTTGAACTGATCAGTGGTAGGAAAAACTGTTCATTCAGATCCAGAACTCACAGCATGGATGATGAACACAACAACAGCAGTGGCAACAATGGAAATTCATCGAACTCATCGACAACAGAACTTGTTTATTTTCCATTATTTGCATTAGAGATGCATGAACAAAAGAGTTACATGGATTTGGCTGATCCAAGGCTAGAAGGACGTGTTACATTTGATGAAGTTGAGAAACTTGTTCGTATTGCATTGTGTTGTGTTCATGAAGATCCAGCACTTAGACCAAACATGGTTACTGTCGTTGGAATGTTGGAAGGTGGGACACCGTTGCCACAACCTAGGATGGAGTGTTTGAATTTCTTGAGATTCTATGGTCGGAGGTTTTCTGAGGCTTCTGTTGTAGCTGAAGAAAATGAACATGGTTCTATGAGGGTTCAACAGCCACGTGACTCAACTCGGTTGGTTAGTGGGTTTTCTTACATATCTTCACAACAAATCTCAGGGCCAAGATAG	2775	0.3899	MIFNSQLKYRRKENGEHSNRPIPLFSIFHSYMSQFCFSSNYHTMKHFLSFSFIVLLFATSVSAYTFSDHISPNFTASYLQFISNTGTFLLSRNKTFKAAIYNPGNQQTSFYLCIIHSASNAIIWSANRDAPISDSDKMRLTVKGITIYGENGNSKWSTPSLKSQVQKLQLTEMGNLVLLDQSNESLWESFDHPTDTIVIGQRLSAGSSLSSASSSSNLSTGNYVLTVTSSDAILQWYGQTYWKLSRDSKAYKNSNDDVEYMAVNTTGFYLFGHNETVHVYEVGLSVTNTRFAKLAFNGQFTVSSFSGTNLKQEFVGPDDGCQIPLACGRIGLCNDHTLSSSSSSSPVCSCPSNFHGVSGNLGGCVPNDGSRSMPLACSNSSTNNHNQSNSSVVSFLSIGYGVRYFANLYSDPFMYGVNLSVCEGLCSRNCSCLGILYGNSSGSCYMIENELGSISNGGEVDMLGLIKANKVWVDIDDDDDDEQNSQKDGFPVFAAVLLPCGGMILLLVFGFFLLWRKFIKSKRQEVILGKQISISRSSGDLDSDPFCIPGLPMRFDYEELEVATDNFKTLVGSGAFGVVYKGVLPDKTIVAVKKIINIGIQGKKDFFAEIAVIGNIHHVNLVRLKGFCAQRGHRMLVYEYMNRGSLDKNLFGGGGQPVLEWQERLDVALGTARGLAYLHSGCEKKIIHCDIKPENILLHDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAISEKTDVYSYGMVLLELISGRKNCSFRSRTHSMDDEHNNSSGNNGNSSNSSTTELVYFPLFALEMHEQKSYMDLADPRLEGRVTFDEVEKLVRIALCCVHEDPALRPNMVTVVGMLEGGTPLPQPRMECLNFLRFYGRRFSEASVVAEENEHGSMRVQQPRDSTRLVSGFSYISSQQISGPR*	925

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g3147	924	Gene3D	Transferase(Phosphotransferase) domain 1	641	863	-	-
	Psa5g3147	924	ProSiteProfiles	Bulb-type lectin domain profile.	73	191	IPR001480	-
	Psa5g3147	924	Gene3D	Phosphorylase Kinase; domain 1	544	640	-	-
	Psa5g3147	924	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	686	698	IPR008271	GO:0004672\|GO:0006468
	Psa5g3147	924	SUPERFAMILY	Protein kinase-like (PK-like)	547	858	IPR011009	-
	Psa5g3147	924	SUPERFAMILY	alpha-D-mannose-specific plant lectins	111	244	IPR036426	-
	Psa5g3147	924	Gene3D	-	84	199	-	-
	Psa5g3147	924	SMART	blect_4	80	193	IPR001480	-
	Psa5g3147	924	ProSiteProfiles	Protein kinase domain profile.	565	869	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g3147	924	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE	50	924	-	-
	Psa5g3147	924	Pfam	Protein kinase domain	568	851	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g3147	924	Pfam	D-mannose binding lectin	122	205	IPR001480	-
	Psa5g3147	924	PANTHER	G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5	50	924	-	-
	Psa5g3147	924	MobiDBLite	consensus disorder prediction	773	792	-	-
	Psa5g3147	924	SMART	serkin_6	565	858	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Psa5g3147	924	CDD	STKc_IRAK	571	860	-	-
	Psa5g3147	924	CDD	B_lectin	82	193	IPR001480	-
	Psa5g3147	924	ProSitePatterns	Protein kinases ATP-binding region signature.	571	594	IPR017441	GO:0005524
	Psa5g3147	924	PIRSF	SRK	39	910	IPR024171	GO:0004674

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g3147	Psa-Chr5	244856138	244859209	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g3147	548	867	Receptor kinase-like Gene Family	AT5G20050	41.994	1.62e-73	247

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Psa5g3147		Pkinase	2.7e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g3147	-		-	ahf:112766506	1100.89