LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g3143	ATGGCCGCTTCTTCTCCGAGTAACAGTTGTTTGCAACCTCTTTCAACCGCAGAGAATGATCTCCAGCCGTTCTTTGTTCTACATAAAGCTTCACATCACGGGAAGGATAGAACGTCAGCAGGACAAGGAAAACCTCGCAAGAGAAATAAGCTTTCTCTTAGATCGCCACAGAGTGCAAATAATCCGGAAGGAAGTTCAGCCGAAGAATGTGACCCCCATTTGTGTCAGAAAACACAGATTGAAGCTTTTGATATTGTTTGGGCAAAAATTGAATCTACCATTAAGGATGTCTTGAGAGACCTCAATGCTAGTGTATTCAACAATATACAACAATGGGTTATGGAGTGCTTCAATACTACTAGATTGGTTGGAGAACCTAGCATTGCTGAAGCAACTCGGTCTTTTCCTGTTCTAAATAATACTACTCCTTTGAAGGTGTACAGTGCGTTAGTTATTACCAGAAACATAGAGTTTGTTGATGACATAATGACATTTGAAGAGCTTGGCCTTTTCTTGAAATCCCATGGATGTCATGTGGCTATGCTTTCATCAATGGAGTTTTCGTTAAAAAATGGAATTGCTGGTTGCTTGAAAGCTTTATTGCGAGAGTTTCTAGGGAGTTCTTTCGATCCATCTGATATACAAACCTTAGCATCATGGTATAGAGAACAAGACAACTACAATAAACCACTAGTGCTGATGATTAATGATTTGGAAAGGTGCTGCGGATCAGTCTTAACCGAGTTTATCCTGATGTTGAGTGAATGGGTTGTCAAGGTGCCAATCATCTTAATATTTGGAGTTGCAACAACAGTGGATGCCCCAAGAAACATTTTTCCATCACATGCTCTTGAATGTTTGTGCCCTTCTATGTTTATGCTTGTAACACCAGCTGAGAGAATGGATGCAATTGTTGAAGCTGTTTTTATAAAACATTGCACCACATTTAATATTGGTCATAAAGTGGCGCAGTTATTGAGAAACTACTTCATCAACCAGGATGGGACAATAACATCTTTTATAAGAGCTTTGAAGGTGGCATGCTTATTACACTTCTCTACGGAACCTTTGAGTCTCATACAAGGGAGAGTTATCGTTGAAGATGAGGTGAGAAATTCTGGATTATCACCTGAGACAATGTTGAAATACTTGGAGGAACTTCCATCATATGCAAGGAATGAAGAGGTTGATCAGACTAAGAAGAGCATGGCTGAAGGTTTGTCAGAATTGCTGACAGTGCAGAAACTATGGAGCACTGTGGTTCTCTGCCTATACGAGGCTGGAAAATATAGCGGAGTGCGGCTGCTGGATTTGTTTTGTGAAGCACTCAATCAAGTTTTGTACCCATCAAGGGATTCTGTCTGTAGTAAGAGGGATGAAAAAGACCATGGCTTGTCTTCAACAAATGATCCCTGTCAGCAATATTCCATCATGCAAAGTGGAGGTTCTATTTGCCAGATAGTACGCAAAGTGAGGGATCTCCCTTCAGGAAAGCTAGATCAATTGATTGAGAGTTGGGAAGAACTTACAGTAGATATTTCAGAGTGCCTGCCAACACAAGAAGATAAACTGATAGGCCCCAGTTATTTGAGAAAGAATTGCCACGTGAGCAGCTGA	1617	0.4075	MAASSPSNSCLQPLSTAENDLQPFFVLHKASHHGKDRTSAGQGKPRKRNKLSLRSPQSANNPEGSSAEECDPHLCQKTQIEAFDIVWAKIESTIKDVLRDLNASVFNNIQQWVMECFNTTRLVGEPSIAEATRSFPVLNNTTPLKVYSALVITRNIEFVDDIMTFEELGLFLKSHGCHVAMLSSMEFSLKNGIAGCLKALLREFLGSSFDPSDIQTLASWYREQDNYNKPLVLMINDLERCCGSVLTEFILMLSEWVVKVPIILIFGVATTVDAPRNIFPSHALECLCPSMFMLVTPAERMDAIVEAVFIKHCTTFNIGHKVAQLLRNYFINQDGTITSFIRALKVACLLHFSTEPLSLIQGRVIVEDEVRNSGLSPETMLKYLEELPSYARNEEVDQTKKSMAEGLSELLTVQKLWSTVVLCLYEAGKYSGVRLLDLFCEALNQVLYPSRDSVCSKRDEKDHGLSSTNDPCQQYSIMQSGGSICQIVRKVRDLPSGKLDQLIESWEELTVDISECLPTQEDKLIGPSYLRKNCHVSS*	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa5g3143	538	PANTHER	ORIGIN RECOGNITION COMPLEX SUBUNIT 3	6	516	-	-
	Psa5g3143	538	PANTHER	ORIGIN RECOGNITION COMPLEX SUBUNIT 3	6	516	IPR020795	GO:0003677\|GO:0005664\|GO:0006260
	Psa5g3143	538	Pfam	Origin recognition complex (ORC) subunit 3 N-terminus	75	359	IPR045667	-
	Psa5g3143	538	MobiDBLite	consensus disorder prediction	25	70	-	-
	Psa5g3143	538	MobiDBLite	consensus disorder prediction	29	43	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g3143	16	515	Core DNA Replication Machinery Family	AT5G16690	44.752	6.54e-144	429

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g3143	K02605		-	gmx:100780646	736.873