Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3122 ATGCTTTCGTTCATCTGCACCTTGTTATTGCCGGCGATGACCGGGGAGCGATGTTACCGCCGGAAGAATATGGTGGAAGAAGCCTCTGCTGCCGCCGCCGTCGTCGAGGAGAGGCCCACACCGGGAAGTTTCCCCGCCGCTTTGGAAATTGATTACTTCTCCCAGGCGAGGAAAGCCTTAAGCGAGCGTTCTCCTTTCGATGTTGCTGAGGAGACGTCGACTTCTGCTGCTGTTACTCTGCCGAGTGGGTTAGCAAGTTTGTTGAGCCGCCTTGGGGATAACCGGAAGCGTCAGAAGAAGTCCCATTCCGGTGGCGGTGATAAAAAGAAGAAATCCTCTAGAGCGGGGGAAAAGTTGCGCGGTTTTGATGTTTGGGTTGAGACGGAGGAGTGTTTTAGGGACTTGAATTTGTCTGATATTGACACGTTATTGGAGGCTTCTACTTCTTATAGTTTAGCTTCTCGCCAGTGTTATACAATTCCGCATTTGGGAAATTCTCCAAGGTTTGAAGTAGTTAGTAGTGAGGATGAGAAGAAGCCTGCTCCATTATTCAATGTAGTTAGTAGTGAGAATGAGAAGAATGTCATTGAAGAGGTGAACAACGAGAATGGTTTCTTGGGAATTGAGTTAAGTGACGTAGTTGAATTGGAAAAAGCTTTGCCTAATGATGACAAGAATTGTGACGCTTCTGATTCCCGTGATAGTTTAGAGTGGTTTTTAGGTAGTAGGAATAGGATTTTTTTAGCTTCCGAGCGTCCATCCAAGAAAAGGAAGCTTTTGGGTGGTGATGCTGGTTTGGAGAAAGTTTTAATGACTAGTTCTTGTGATGGGGACCAACCTTGTTGTCATTATTGTGGCAGAGGAGATTCTGTCACGAATTCCAACAGGTTAATAGTCTGCTCTTCTTGTAAAGCCGTAGTTCATTGGAAGTGCTATGGTATACAAGATGATGTAGATGAGTCTTGGTTGTGCTCTTGGTGTAAGCAAAAGGGTGATGTTGATGATTCGGTGAGTCCATGTGTTCTTTGCTCAAAGAAGGGCGGCGCATTAAAACCAGTTAGTGGTGTTGATGAAGGAGTTGAGTCTTCCCAGTTTGTGCACCTGTATTGTTGTCTGTGGATGCCAGAGGTTTACATTGATGATTTGAAGAAGATGGAGCCTGTTATGAATGTGGAAGGCATCAAGGAAACCAGAAGAAAATTGGTGTGTAGTGTTTGCAAATTGAAATCCGGTGCATGTGTTCGGTGCAGTCATGGATCCTGCAGAACTTCTTTCCATCCTTTATGTGCAAGGGAAGCTAGACATAGAATGGAGGTTTGGGCAAAGTATGGTAATGATAATATTGAGTTGCGGGCTTTTTGCTTGAAACACTCAGATTTACAAGAGAACAGAAGCATCTTGCCATTGGGGGGCTCTATTGCAGTTGGCAACGAATTTCCAAAAGCTAATGACCTCCCAGTGACATTGCCAGTAAAAAGTGAACACAATGTAAAAATTGGTTGTAGCAATGGAGGGTTGGAGTCTGATGCCAATCCAGACACGTTGAACCATAATGATCAACCTCCTGACGGCGGATTGTCTGTCTGTACAGTTAGTGCTCAAAATATGTTGGGATGTGGCGCTGCGCCACCACATAATATTGGGGTGGAAGGGAGAACCAATGAGAATGTTAATGCCTCTGATTCCCCCAGTTTTGCACTTGTTTTGAAAAAGTTGATAGAGAGAGGGAAAGTTGATGTGAACAATGTAGCATTGGAGATTGGCATTTCACCAGATACATTAACTGCAAATATCAATTTGCAGGAAGGTTATATGGCCCCTGATGTGCAACACAAAATAGTCAATTGGCTAAAAGCCCATGTGTATACTGGGGCATTTCACAAAGGTTTAAAAGCCAAAATCAAACCAGCCAATGTATCTCTGGATGGAAGTGGAGCTTCAGACGGTTCTGATACTTCACCGTTATCTGATTCAGGCTTGCCGAATCCGGTTGCTGTTAATGTTAAGTCTGTACCACCAAGGAGAAGAACTATCAGTAACATTAGGATTTTGAAGGATAATAAAGTGATATGTTCATCGGAGGGGGTTACTACTAGTGAGAATGGCGTATCAATTGATAAGTTCCTAGTTCCTGAGTGTGAAAATCCAGGAATTTCCAACAAAGCGTCAATTTCTGATACCACTGAAACTGAAACTGAAACGAATATAACAAAGTCTGATGATATATTTCATGGGGTTCAAGGTAATGCTGATGAGCCTTACAAACCCAGCTTATCTTTATGCGTTCCAGAACAAAAGTCTACTAATTTGCAGAATGCTTCCATGCTTTCTGATCTGCACTATCCATCTCATTCTGCTTCAGAACCACCCGATCCTGGTTCCATGAAAATGGAAGCAATCTCTAGTTACATTCACCCATACATTAACAAGAAATTGCTTCAGATTCATGATTGCTTGGTTCCGAAGGATCTTATAGGTTTAAGTGGCTACAGAAATTCTTTGGTTGAATCCTCTGTAGCTAATAGCTGCTCAAATAGGGAAAGTCAGCAATTAATTTGCACCGATGTTTACCAGCCCGATCAAGTAAAAATAGAGCAGTTGGTTAAGGATAAAAATTTGCAACTTTTGGAATTTTATTCAGAAGATGAGTTGGAGACGGAACTTTTATATTTTCAGCATAGACTGCTGCAGAGATCAGTTGCAAAAAAGAGCCTTACTGAAAACTTGGTCTACAATGTTGCAAAGGATTTGCCTCAGGAGATTGATAAAACACATCAACAAAGATGGGATGCTGTGATTGCTAATCAGTATCTGCTTGATCTTAGGGAGGCAAAGAAACTGGGTAGAAAAGAAAAAAAGCACAAGGAAGCGCAGGCAGTGTTGGCTGCTGCAACTGCAGCAGCTGCAGCATCTTCCAGGGTTTCTTCTTTTCGTAAAGATACCATTGATGAATCTGTGCAACACGAGAATTCATTTAAGTTGGATGCTTTAAGCGGGCGTTCTGGTGCATGTTCTCAGCCAATGCCACGTGCTAAAGAGACTCTTTCGAGAGTTGCTGCCACTAGAGCTTCATCAGAAAAATATTCGGATTTTTCTCTGCCAAGCTCAGAATTTTCTAAGGAGCAACGTAAATCATGTGATATCTGCAGACGGTTTGAGAATATGTTAAATCCTATCCTAGTCTGTTCTGGTTGCAAGGTTGTGGTGCACTCTGTTTGCTATCGTAGTGTGAAAGAAACAACAGGTCCATGGTTCTGTGAGCTGTGTGAAGACTTGTCCAAAAGTTCTGGGGCATCTGCTATAAATAGCTGGGAGAAGCCTTATTTTATTGCAGAATGTGCTCTCTGTGGCGGTACTACCGGTGCTTTTAGGAAATCTTCTGATGGTCAATGGGTTCATGCCTTCTGTGCTGAGTGGCTTTTTGAGTCTACATTCAGAAGAGGACAAATAGATGCAATTGAAGGAATGGAGACTGTGCGAAAAGGAGTTGATATTTGTTGCGTCTGCCACCGCAGACATGGTGTTTGTATGAAGTGTTGTTATGGCCATTGCCTGACCACATTCCATCCATCCTGTGCTAGAAGTGCTGGTTTGTTCATGATTGTGAGGACTGCTGGGGGCAAGATGCAACACAAGGCTTACTGTGAAAAGCATAGTTTGGAGCAGAAAACAAAGGCTGAAATTCCAAAGCATGGAGTTGAAGAATTAAAAAGTATCAAGCAAATTAGGGTGAGACCTTCCTATCTACTTTTAATCTTGATTCCGTACTCATTTATTTTAAGGCTTGGCAATGGATATATTGTCATTGGATAA 3813 0.4262 MLSFICTLLLPAMTGERCYRRKNMVEEASAAAAVVEERPTPGSFPAALEIDYFSQARKALSERSPFDVAEETSTSAAVTLPSGLASLLSRLGDNRKRQKKSHSGGGDKKKKSSRAGEKLRGFDVWVETEECFRDLNLSDIDTLLEASTSYSLASRQCYTIPHLGNSPRFEVVSSEDEKKPAPLFNVVSSENEKNVIEEVNNENGFLGIELSDVVELEKALPNDDKNCDASDSRDSLEWFLGSRNRIFLASERPSKKRKLLGGDAGLEKVLMTSSCDGDQPCCHYCGRGDSVTNSNRLIVCSSCKAVVHWKCYGIQDDVDESWLCSWCKQKGDVDDSVSPCVLCSKKGGALKPVSGVDEGVESSQFVHLYCCLWMPEVYIDDLKKMEPVMNVEGIKETRRKLVCSVCKLKSGACVRCSHGSCRTSFHPLCAREARHRMEVWAKYGNDNIELRAFCLKHSDLQENRSILPLGGSIAVGNEFPKANDLPVTLPVKSEHNVKIGCSNGGLESDANPDTLNHNDQPPDGGLSVCTVSAQNMLGCGAAPPHNIGVEGRTNENVNASDSPSFALVLKKLIERGKVDVNNVALEIGISPDTLTANINLQEGYMAPDVQHKIVNWLKAHVYTGAFHKGLKAKIKPANVSLDGSGASDGSDTSPLSDSGLPNPVAVNVKSVPPRRRTISNIRILKDNKVICSSEGVTTSENGVSIDKFLVPECENPGISNKASISDTTETETETNITKSDDIFHGVQGNADEPYKPSLSLCVPEQKSTNLQNASMLSDLHYPSHSASEPPDPGSMKMEAISSYIHPYINKKLLQIHDCLVPKDLIGLSGYRNSLVESSVANSCSNRESQQLICTDVYQPDQVKIEQLVKDKNLQLLEFYSEDELETELLYFQHRLLQRSVAKKSLTENLVYNVAKDLPQEIDKTHQQRWDAVIANQYLLDLREAKKLGRKEKKHKEAQAVLAAATAAAAASSRVSSFRKDTIDESVQHENSFKLDALSGRSGACSQPMPRAKETLSRVAATRASSEKYSDFSLPSSEFSKEQRKSCDICRRFENMLNPILVCSGCKVVVHSVCYRSVKETTGPWFCELCEDLSKSSGASAINSWEKPYFIAECALCGGTTGAFRKSSDGQWVHAFCAEWLFESTFRRGQIDAIEGMETVRKGVDICCVCHRRHGVCMKCCYGHCLTTFHPSCARSAGLFMIVRTAGGKMQHKAYCEKHSLEQKTKAEIPKHGVEELKSIKQIRVRPSYLLLILIPYSFILRLGNGYIVIG* 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3122 1270 ProSitePatterns Zinc finger PHD-type signature. 1046 1089 IPR019786 -
Psa5g3122 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 336 IPR013083 -
Psa5g3122 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1021 1099 IPR013083 -
Psa5g3122 1270 SUPERFAMILY FYVE/PHD zinc finger 1034 1090 IPR011011 -
Psa5g3122 1270 Pfam PHD-zinc-finger like domain 1112 1218 - -
Psa5g3122 1270 Pfam PHD-zinc-finger like domain 339 457 - -
Psa5g3122 1270 ProSiteProfiles Extended PHD (ePHD) domain profile. 337 458 IPR034732 -
Psa5g3122 1270 CDD ePHD 1113 1218 - -
Psa5g3122 1270 ProSiteProfiles Extended PHD (ePHD) domain profile. 1110 1219 IPR034732 -
Psa5g3122 1270 ProSiteProfiles Zinc finger PHD-type profile. 1043 1092 IPR019787 -
Psa5g3122 1270 PANTHER PHD FINGER PROTEINS 203 466 - -
Psa5g3122 1270 PANTHER PHD FINGER PROTEINS 810 1249 - -
Psa5g3122 1270 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 810 1249 - -
Psa5g3122 1270 PANTHER PHD-FINGER DOMAIN CONTAINING PROTEIN FAMILY-RELATED 203 466 - -
Psa5g3122 1270 MobiDBLite consensus disorder prediction 94 115 - -
Psa5g3122 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1110 1220 IPR013083 -
Psa5g3122 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 460 IPR013083 -
Psa5g3122 1270 SMART PHD_3 402 458 IPR001965 -
Psa5g3122 1270 SMART PHD_3 281 328 IPR001965 -
Psa5g3122 1270 SMART PHD_3 1165 1219 IPR001965 -
Psa5g3122 1270 SMART PHD_3 1045 1090 IPR001965 -
Psa5g3122 1270 Pfam PHD-finger 295 328 - -
Psa5g3122 1270 Pfam PHD-finger 1057 1090 - -
Psa5g3122 1270 ProSitePatterns Zinc finger PHD-type signature. 282 327 IPR019786 -
Psa5g3122 1270 SUPERFAMILY FYVE/PHD zinc finger 273 332 IPR011011 -
Psa5g3122 1270 ProSiteProfiles Zinc finger PHD-type profile. 279 330 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3122 Psa-Chr5 241654335 241664824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3122 295 465 C2H2 Transcription Factor Family AT3G14740 28.736 1.14e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3122 - - mtr:MTR_3g073320 1867.05