Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3111 ATGGAGGAATTGCATAAAGCCCTAAAGGATCGTGATTTAACCGTTTCCACCGTTCATGGAAAGGGTCGTTCTCTCGTCACTACTAGGGATTTCTACCCAGGGGAGGTGATTCTTAGTCAAGAGCCTTATGTTTGTGTTTCAACTCACAAAAGGTGTGATGGTTGTTTCAGAACAACTAACCTTAGCAAGTGTTCACGTTGTCAAGTTGTTTGGTATTGTGGAACACCATGTCAGAAGTCGGAGTGGAGGTTGCATCGTCTTGAATGTGAAGCTCTGTCAAGGCTAGACGACCGCAAGAGAAAGTCTGTTACGCCGTCGATACGGTTGATGCTCAAACTTTATCTTCGAAGGAAGTTGCAAGATGAGAAGATCATTCCAAGCACAGCTATGGACAACTACAAGTTAGTGGAGGCATTAGTGGCCCACATGTCTGACATTACAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTACAATGGCCTGAAATCAATATTAAAGAGATTGCAGAAATTTTTTCCAAGTTTGCGTGTAATGCACATACCATTTGTGACAGTGAGTTGAGACCTTTGGGAACTGGACTGTATCCTGTTGTTTCCATTATCAATCACAGCTGCTTGCCCAATTCAGTTTTGGTTTTTGAGGGAAGGATAGCATCGGTACGTGCTTTGCAGCAATTACCCAAGGGGACTGAGGTATTGATAAGTTATATAGAGACAGCGGGAAGCACCGTGACTCGACAGAAGGCTCTCAAGGAGCAGTATCTATTCACTTGTGTTTGTCCTCTCTGCTCTAAAGTGGGTCAGTACGATGATGTTCGAAAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGTACAACTGACGGACAAGCATTCCAATGCCAAGAATGCGGGTTAATTAGGGACAAGGAAGAAATAAAGAAAATTGCAACTGAAATAAAATTGCTATCAGAAGAAGCTTCTAAGCCTTCTTCTAGTGCCAATTTTCAAGAAGCTATATCTATATATAAAATGATTGAGAAACTGCAAACAAAATTATATCACCCTTTCTCAATCAATTTGATGCAAACACGAGAGACGATTTTGAAGTCACTAATGAAGCTAGAACATTGGAGAGAAGCTTTAGCATATTGCAAACTGACCATACCAATCTATCAAAGAGTATATCCAGCTGTTCACCCTCTGCTTGGCTTGCAATATTATACTTGTGGAAAACTTGAATGGTATCTTGAAGACACGGAGGAAGCTGTTATATCATTGACCAAGGCTGTGGATATACTAAGGATTACTCATGGTACAAATACTCCATTTGTTAAGGAACTTTTGACGATGTTGGAGGAAGCCCGTGCAGAATTAACTTACAAATCGTCTTCCAAAGAGGAGTAG 1434 0.41 MEELHKALKDRDLTVSTVHGKGRSLVTTRDFYPGEVILSQEPYVCVSTHKRCDGCFRTTNLSKCSRCQVVWYCGTPCQKSEWRLHRLECEALSRLDDRKRKSVTPSIRLMLKLYLRRKLQDEKIIPSTAMDNYKLVEALVAHMSDITEEQLVLYAQMANLVHLILQWPEINIKEIAEIFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGRIASVRALQQLPKGTEVLISYIETAGSTVTRQKALKEQYLFTCVCPLCSKVGQYDDVRKNAILEGYRCKNETCDGFLLRTTDGQAFQCQECGLIRDKEEIKKIATEIKLLSEEASKPSSSANFQEAISIYKMIEKLQTKLYHPFSINLMQTRETILKSLMKLEHWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLEDTEEAVISLTKAVDILRITHGTNTPFVKELLTMLEEARAELTYKSSSKEE* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3111 477 Gene3D - 102 186 - -
Psa5g3111 477 Pfam MYND finger 52 89 IPR002893 -
Psa5g3111 477 Gene3D SET domain 24 270 IPR046341 -
Psa5g3111 477 SUPERFAMILY TPR-like 343 442 IPR011990 GO:0005515
Psa5g3111 477 Gene3D Tetratricopeptide repeat domain 397 476 IPR011990 GO:0005515
Psa5g3111 477 ProSiteProfiles SET domain profile. 11 244 IPR001214 GO:0005515
Psa5g3111 477 Coils Coil 315 335 - -
Psa5g3111 477 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR1 1 468 - -
Psa5g3111 477 Gene3D - 51 98 - -
Psa5g3111 477 SUPERFAMILY SET domain 13 243 IPR046341 -
Psa5g3111 477 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 1 468 - -
Psa5g3111 477 Pfam SET domain 22 243 IPR001214 GO:0005515
Psa5g3111 477 ProSiteProfiles Zinc finger MYND-type profile. 52 89 IPR002893 -
Psa5g3111 477 SMART set_7 11 250 IPR001214 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa5g3111 SET 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3111 K11426 - gmx:100789518 764.992