Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3104 ATGGAGATGGATATGGATATGGATGCTATCCACCACCTCGACTTCTCCGGACACAGCAGTACCCTCACTAACACCCCTACTTCGGACGATGATTATGGTTGCAACTGGAACCACTGGTCCCCCATCGTCAACTGGGACACCTTTACTGGTGCCCCGGATGACTTTCACCACCTCATGGATACCATCATCGACGGCAGAACCACCGTCCTTGACCAGCTCAGTCCAACCACAACTACGACCACAACCACAACCACCGAGGAGGAAGAAGAAACAGAAACAACTACCACCACCACAACAACAGAAACAGTTGGCGTTGGCGATGGCGATGATTTGAAGGGGCTAAAACTAGTGCACCTATTAATGGCTGGAGCGGAAGCCTTAACAGGCTCCACCAAGAGCCGCGACTTAGCTCGAGTGATATTGGTTCGGCTCAAGGAGTTGGTTTCACAACACGCCAACGGCTCCAACATGGAAAGACTCGCCGCTTATTTCACCGAAGCTCTTCAGGGCCTACTAGAAGGCGCTGGGGGTGCGCACAGCAACAACAACAAACATTACCTCACCACTAACGGGCCCCACGACAACCAAAACGACACACTCGCTGCTTTCCAACTACTTCAAGACATGTCTCCTTATGTCAAGTTCGGCCACTTCACCGCCAATCAGGCCATACTCGAATCCGTGGCCCACGAACGCCGCGTCCATGTCATTGACTACGACATCATGGAAGGGGTCCAATGGGCTTCACTAATCCAAGCCCTAGCTTCCAGCAACAACAGCCCACATCTTCGGATCACCGCATTATCCCGAACCGGAACAGGACGGAGATCAATCGCCACCGTACAAGAAACCGGCCGCCGTTTAACCTCTTTTGCCGCTTCCCTCGGCCAGCCGTTTTCTTTTCACCACTGCAGGTTAGACTCCGACGAAACTTTCCGTCCTTCTTCTTTGAAGCTTGTTCGAGGAGAGGCTTTGGTTTTCAACTGCATGCTGAATCTGCCTCATCTTAGTTACCGTGCACCTGATTCGGTTGCTTCGTTTTTAAACGGAGCAAAAGCTTTAAACCCGAAGCTTGTGACGTTGGTGGAGGAGGAAAATGGATCTGTTGTCGGTGGATTCGTGGAGCGGTTCATGGACTCGCTTCACCATTACTCAGCGGTGTTTGATTCGTTAGAGGCTGGGTTTCCTATGCAGAATCGGGCCAGGGCTTTGGTGGAGCGAGTGTTTTTCGGGCCCCGAATAGCGGGCTCGTTGGGCCGGATATATAGAACAGGTGGAGACGGAGAGGAGGAGAGAAGGTCGTGGGGGGAGTGGTTAGGTGCGGCGGGGTTTAGAGGAGTTCCGGTAAGCTTTGCAAATCACTGCCAAGCGAAGCTGTTATTGGGTCTTTTCAATGACGGGTATAGGGTCGAAGAGGTGGGTTTGGGTAGTAATAAGTTGGTGTTGGATTGGAAATCAAGGCGTTTGCTTTCTGCTTCCGTTTGGACTTGTTCTTCGGATTCTGATTTATAG 1512 0.5179 MEMDMDMDAIHHLDFSGHSSTLTNTPTSDDDYGCNWNHWSPIVNWDTFTGAPDDFHHLMDTIIDGRTTVLDQLSPTTTTTTTTTTEEEEETETTTTTTTTETVGVGDGDDLKGLKLVHLLMAGAEALTGSTKSRDLARVILVRLKELVSQHANGSNMERLAAYFTEALQGLLEGAGGAHSNNNKHYLTTNGPHDNQNDTLAAFQLLQDMSPYVKFGHFTANQAILESVAHERRVHVIDYDIMEGVQWASLIQALASSNNSPHLRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDETFRPSSLKLVRGEALVFNCMLNLPHLSYRAPDSVASFLNGAKALNPKLVTLVEEENGSVVGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARALVERVFFGPRIAGSLGRIYRTGGDGEEERRSWGEWLGAAGFRGVPVSFANHCQAKLLLGLFNDGYRVEEVGLGSNKLVLDWKSRRLLSASVWTCSSDSDL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3104 503 MobiDBLite consensus disorder prediction 73 99 - -
Psa5g3104 503 Pfam GRAS domain family 116 496 IPR005202 -
Psa5g3104 503 ProSiteProfiles GRAS family profile. 107 496 IPR005202 -
Psa5g3104 503 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 496 IPR005202 -
Psa5g3104 503 PANTHER SCARECROW-LIKE PROTEIN 26 4 496 IPR030028 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3104 Psa-Chr5 240427983 240430291 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3104 107 495 GRAS Transcription Factor Family AT5G41920 35.787 1.38e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa5g3104 GRAS 2.3e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3104 - - gmx:100782300 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3104 5 240427983 240430291 Psa5g3104 5 240427983 240430291 ECH