Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3086 ATGAATACCGAATTTTCAATGGCGTTTCCTCCTTACGGTCAGTCTCATTTCCGTAGCAAAACTTATTCCACCCTTGTCCGCATTCTCTCCCACCTCTCTCCTTCCACCGTTCCAACGCAATCATCGCTTCCTACAATTCAAGAGGGTGAATTTGAGAAAGAAGAATTGTATGGTCATCAGGTTGATGAAGTAGCTCATAGTTGTTTAGATAATGATAAGATTATCGAAGCATTGAATGTGACAGAAGATGGTGGATTATTGGATTCAACAACTATGGAAGATAAAGAGAAAGCAGAGAAATTAATCTGTGTGACAGATGCTACAAATTCTTCCAATCTTCTGATCGAAGAAGGAGATCTAGAAGAGGGAGAAATTTCTGGAGATTTTGCAATGGATGGAAACACAGTTGACGTGTCTTCTGTGGATGCTACAATTTCAGAACAGATGAAAGTGGATGAGATTCAGAAACTCGGGAATTCATTTGGAAACCAGGCATCCCCCTTCAATATGGGTAACAATGGACTAGTAGAACTTTGGACTATCAATGACATATCAACATATTTAACCCCAAAGCAAGTCTTGGTACAGATGGTTGATGCCAACAGAAATGAACAAAGTGATCCTTGCCCTATGAAGAAAACCATAAAGGAGGTAATTGATCCCAGTAGAAAGAGAAAACGTATTCCTGATTTAGAGAAGGAGGATAAAAAGAAGGAGATGGTTGATGCCAGTAAAAGTAAACGTGGTCCTCGTTCTCAAGAGAAGAAAATTAAAAAGAGGGAGAAGTATCGAAAGAAAAGAGCAGAAAAGAACAGAGAACTAGGTGTTAAAAGGTTGAAGTTGATTCCAGTACAGAAACCAAAAACAATCTCATATTGTCGCCATTATATGAAAGGAAGGTGCAATGAGGGTGACAAGTGCAAATTCTCTCATGATACTGTTCCTGAAACAAAGTCCAAGGCATGTGTTCACTTTGCTCGTCACTCTTGTATGAAAGGGGATGATTGCCCATTTGATCACCAACTCTCCAAGTATCCTTGTTCTAATATAATTTCTAATGGCTCTTGTTCTAGAGGTCATGCTTGTTTGTTTTCACACCAGGTACCAATCAACCAACGTATACCTGCGCCTACAAATGCTTACAAACCAGAGTTGAAATCTCCTCTTCCGTCAGGAAATACAAATTTCAGTACGCCACTGAATAATCATGACACTAGTTATGTCCAACAAAACCACTTCACCAATTCTAAGGGAACAGAAACTTCACAGACAAAACCTACCTCAACACCCAAAGGAATTAGATTCATAAATGTTGCTAACTTATCATCTAGTACGCCAAAACAAGACTTAATAACACCAAACAAGGGAAGTCTTGTCCACAATGGGAAGTGTGCAGATAAAGGTCAAAATACTACAGAAATTCCTAAGAAATTTTCGGCTGTCACGCCCAAGGGAATTAACTTTCTTTCTTTCGGCAAAGGTTCTGTTTGCAGGTTTAAAAGTATTATTCAATCCACTGCACAAAATTTACCTCAAACTGCGCTATTCTCACATAATGAAATTTCAGACAAAAAGCAATCCATGGTAGAACGAATGAAATCAAAGTTTCTAGAGAAAGATTCAACTGATGATTCTATGAGGGATCACAGCCATTGTAAATCGGTTCAAGAAGTAAAAAAGGTATCTGACAATTCTCAGACTTCCAATGTGACCTCAGCCACACTTCTTGCCCGTCCGTTTGTTTCACATCAGTCTTCTGGAAGCCTAGTATCTGAATATCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCTTATCAACTTTAGCTTTTGCAGCAGAGCATGAATCAGATATTAAAATGAAATGCCCCACTGTTGATTCACCTGTATGA 1893 0.3888 MNTEFSMAFPPYGQSHFRSKTYSTLVRILSHLSPSTVPTQSSLPTIQEGEFEKEELYGHQVDEVAHSCLDNDKIIEALNVTEDGGLLDSTTMEDKEKAEKLICVTDATNSSNLLIEEGDLEEGEISGDFAMDGNTVDVSSVDATISEQMKVDEIQKLGNSFGNQASPFNMGNNGLVELWTINDISTYLTPKQVLVQMVDANRNEQSDPCPMKKTIKEVIDPSRKRKRIPDLEKEDKKKEMVDASKSKRGPRSQEKKIKKREKYRKKRAEKNRELGVKRLKLIPVQKPKTISYCRHYMKGRCNEGDKCKFSHDTVPETKSKACVHFARHSCMKGDDCPFDHQLSKYPCSNIISNGSCSRGHACLFSHQVPINQRIPAPTNAYKPELKSPLPSGNTNFSTPLNNHDTSYVQQNHFTNSKGTETSQTKPTSTPKGIRFINVANLSSSTPKQDLITPNKGSLVHNGKCADKGQNTTEIPKKFSAVTPKGINFLSFGKGSVCRFKSIIQSTAQNLPQTALFSHNEISDKKQSMVERMKSKFLEKDSTDDSMRDHSHCKSVQEVKKVSDNSQTSNVTSATLLARPFVSHQSSGSLVSEYHKQASNLGQRALLSTLAFAAEHESDIKMKCPTVDSPV* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3086 630 MobiDBLite consensus disorder prediction 251 266 - -
Psa5g3086 630 SMART c3hfinal6 344 368 IPR000571 GO:0046872
Psa5g3086 630 SMART c3hfinal6 288 313 IPR000571 GO:0046872
Psa5g3086 630 SMART c3hfinal6 316 342 IPR000571 GO:0046872
Psa5g3086 630 Gene3D - 317 381 - -
Psa5g3086 630 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 96 625 IPR045124 GO:0003723|GO:0045892
Psa5g3086 630 Gene3D - 257 316 - -
Psa5g3086 630 SUPERFAMILY CCCH zinc finger 287 312 IPR036855 GO:0046872
Psa5g3086 630 ProSiteProfiles Zinc finger C3H1-type profile. 346 369 IPR000571 GO:0046872
Psa5g3086 630 PANTHER PROTEIN SUPPRESSOR OF SABLE 96 625 - -
Psa5g3086 630 MobiDBLite consensus disorder prediction 221 270 - -
Psa5g3086 630 ProSiteProfiles Zinc finger C3H1-type profile. 316 343 IPR000571 GO:0046872
Psa5g3086 630 Pfam CCCH-type zinc finger 293 312 IPR041367 -
Psa5g3086 630 MobiDBLite consensus disorder prediction 221 250 - -
Psa5g3086 630 ProSiteProfiles Zinc finger C3H1-type profile. 287 314 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g3086 zf-CCCH_4 3.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3086 - - cam:101495956 714.531