Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3072 ATGGCCGATCCCGTCACGGAACTCAGTCCCTCAGACAATACCCCCAGACCGATGACCCGCAATGTCCGCCGGAGGTTGGTCCAATCAACTCTCTTCCCTCACAAACCAGCAGAGCCCAGCAATAAACCAGAGGAAAATGGCGACAGTTGTGACGAACAAGACGAGGATTACTGCGACACGAAGAATCGCAGGAAGAGAAAGTCCAAAGGAAAAGCCACTCCCACAAATAAAGGTTCCAAGAGTGCCACACCAAAGAAAAATGCATCAGCTAATGGAATTATAGGGTCTACTTCGCGGAATGTTTTGTCTGATTTCGATAAAGTTGATAAACCTAAGCCTGATTTACGGTTAGAGGCAAAGTTGTCAGCTGAGGAAAATTCAAGGTTGTTTGCCGGCCGGCAAGTTCATCCATTTTTTTCATCCTGTAAAGCGGGGAAGAAAGTTCAGGAGCTGTCTGAATCAGGAAGTGATCTATACAAAGCTAAGAGTGGTGATGAAAAGATTACCTGTGGTCCTATTCATGTATTTGAAAATATCAAGGATGATACCTCATCCCTAGACTGGAGAAACTGGACATTTTTGAGAAATTCCACCCATGTGAATGGTGGATTAGAAAGTTCAAATTTATCTGTTTACGAGGGTTCTGTTGAATGCTTAAATTTTGATAAACTTCTTAGTACTTTACATCCATTGGGGGCTTCAAGTTATCATTCTCCGTGTCCAGAAAATCTGCAAGAAACATCATTATCAAACTTAACTTTACAAGAGGAGCAAACAAAAAGTGCCCAGATGCCAAAAAATGCCAAAGTGGACTTGGAGGTGGATGAATCTGATACCTTTTCTGTGCTAGCTGGCTATTTTAGAAAGTCATGTACTGAGCCGTCTAGTAGATTTCTCCAAGAAAGTCTGAGGTCATACTATGTTGGTTGTGAGGATAAACCAGAAGGCAGCTTATGGGCATACAAATACAAGCCAACTAAAGCCGTTGAGGTATGTGGTAATGACGAAGCTGTGAATTTCTTGAGTGACTGGCTACATCAGTGGCATGAAAGACGTTACAAACCCAGGAAGGAGACATCTAAGAGGGATACAAGGGTCATGCAAGATGATGATGATGATGATGATGATTATATGTGTTCTGACAGTGACTATGATTCAGAAGATATGAATGAAGAGGATTCACTGCAGAATGTTCTTTTAATTACAGGACCAACAGGGAGTGGCAAGTCCGCAGCAGTCTATGCTTGTGCCCAAGAGCAAGGCTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGGGACTGTTGTAAAGCAGTATTTTGGAGATGCCCTTGGTTCACATGGGTTCAAAAGGTTATCAGAACATACTTTGAGTTCACAGAAGATAACTACAAATTTCCCCCCAGCTCCTGCTTTGATTAATGATAAAGCTGCGGATGAGGTGAATGACGGAGTAGTTGAACCAATACCGTTATCTGATGATGAAGCTCATAGCCCATTTAAAACATCCCAAAAGTTACTTGGCAAGAATGACGCTGTTGCATGTGATAAAGTCCAAACTTTGATTCTGGTTGAGGATGTGGACATACTCTTTCCTGAAGATCGTGGATGTATTGCCGCCATACAGCAGATTGCCGAGACAGCAAGGGGTCCAATTATATTGACCAGCAATAGTGATAATCCTGGCCTTCCAGATAATTTTGATAGGCTTCATGTTTCGTTCTCAATGCCAACGCCAAAAGAGTTGCTTTGCCATTTGTACTCTGTTTGTCTGGGAGAAGGAGCCCCCATCCATCCTCTTCTACTGGAGAAGTTTATACAGTCCTGTGGCGGAGACATCCGGAAGACCATTATGCATCTTCAGTTCTGGTTGCAGAGTATAATATTTAGTAAAGATCTAAAAGCACAGACAGGATATGTCTCACTTCCATTTGATCTCGAGGGTGGTCATCGGATACTACCAAAGATAATGCCATGGGATTTCCCTTCAGAGATATCCGAACTAATTGAGAATGAATTTGTCAAATCAGTAAATATAATGGAAGAGAATTGCAGTATGCAAGGGTTAGATGAAGAAGAGCTTCTTCACATAAATGAAAGCCAAAATGATTCAGATGAGCAGTATATGGAGACTGATTATATAAAAGCGAAGAAGGTGGAGATGATTAAGAGAAATGGGTCTGTAACAGATTATGACGAGCTTGAAATTCAATACAAAGCTATCTCCGAGTTTCCCAATGCTTCTGGGTCCCCTGAAGCATCCTATCTGCAAAATGGTCGAAGAAAACTTGTAGTAATGTCCTCTGATTCTGAGGAGGAGGATTCAAATAACCGATATCCTCAAGACACAGAGGACGAAGCTAACAAGAGACATTCCATCAAAGGAAATAATGAATTTACCTCTGACATTCAGTTGAATGAAAACTGCCCCAACACATCTTTTCGTAAACTGGTTTGTTCTGAATTGGAGGATTCAGATGAGGAACGTAATAAATATTCAAAAACAGCTGATGTTACATGCATAAATGAGACATCTAAATCATTTGATATATCCTGTGTACCAGAATCATCGTTTGTTCCTGAAACTGCTATTGAAAGTGGAACAGATACAACGTCTGGAGCAGTGTCTTCTGGTCAGTGTCTAGAAGTTTCTATGAATAACGAGTTGAAACCGTTCACTTTAAGTGCTCGGAGGCGCTTAACAAAATTATCACACAATTCAGATATGATGGATGCTGAAATTCCAGATTCTTCTCCAAAAGAGGCTCTACAAGATTTTATAGATGAAAATATGGAAACTACAATTATCAAGGTGATGGATGAGTGCAGTCGTGTGGATTTCAAACTAAAGTCAACATTAGTTGAGTCCAGTCCATTATTGGAGACAGATATGGTACAAAATTTATGGAAAAAACTCCGACAAATGGATTTAAGACAGCATACTATCTCAGAACAGCCAGGGGCTTCTCAAGTTGTTAAACTTGCTAGTGGGTTGAGCAATCTAATTTCAGAAGCTGATTTGTTTCACAATTACCAACATAAACACGATATTTCGGAGCCCCGGAGCTTTGTTTCTAATGAAGCTACAACTAGTTATAATGACGAAACAATGATGTCCACAGTTATTGTACATGGGTTTTGTTCTTATGTTAAACTTATAACAGATGTTGGATCAAAGTTTGGTTGTGCGAACATGATTGATTTAACTTCTGAGATGTTGGCTTCCACAACTAATACAATGGCATTGGGGAAATTATCCAGACAGGATCTTGCCCAAAACACAGTTATTTATACTGGGAAGGAATTAGAGTTGAACAACCCCATAAGTAATGTGAAGAAGAGTGAAAATGAAGCATCTCTGTTTGAGGTTGTCCAATCCATTGTTCCTGCAAGAATATCCTTAGCACTGAAAGGTGATATCTTCTATGAATATTTATCTTCAATGCGCCAAATTTCAAGGTCAGAAGCAGTCCGTGTTTCACAATGTGTTGAAAAGAAGAGAAGAGGAAGGTCGCAGGGGTTTCAACATTATTTGAGCAGATGTACAATGTTGTCTCCTGAAGCTATAACGTTGGTCAGTGATAGTGATTTGTACAAAAAGATTTCTTCACAACATACCAACGTGGAAAGTACACCATTGTAG 3648 0.4024 MADPVTELSPSDNTPRPMTRNVRRRLVQSTLFPHKPAEPSNKPEENGDSCDEQDEDYCDTKNRRKRKSKGKATPTNKGSKSATPKKNASANGIIGSTSRNVLSDFDKVDKPKPDLRLEAKLSAEENSRLFAGRQVHPFFSSCKAGKKVQELSESGSDLYKAKSGDEKITCGPIHVFENIKDDTSSLDWRNWTFLRNSTHVNGGLESSNLSVYEGSVECLNFDKLLSTLHPLGASSYHSPCPENLQETSLSNLTLQEEQTKSAQMPKNAKVDLEVDESDTFSVLAGYFRKSCTEPSSRFLQESLRSYYVGCEDKPEGSLWAYKYKPTKAVEVCGNDEAVNFLSDWLHQWHERRYKPRKETSKRDTRVMQDDDDDDDDYMCSDSDYDSEDMNEEDSLQNVLLITGPTGSGKSAAVYACAQEQGFDILELNASDCRNGTVVKQYFGDALGSHGFKRLSEHTLSSQKITTNFPPAPALINDKAADEVNDGVVEPIPLSDDEAHSPFKTSQKLLGKNDAVACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIILTSNSDNPGLPDNFDRLHVSFSMPTPKELLCHLYSVCLGEGAPIHPLLLEKFIQSCGGDIRKTIMHLQFWLQSIIFSKDLKAQTGYVSLPFDLEGGHRILPKIMPWDFPSEISELIENEFVKSVNIMEENCSMQGLDEEELLHINESQNDSDEQYMETDYIKAKKVEMIKRNGSVTDYDELEIQYKAISEFPNASGSPEASYLQNGRRKLVVMSSDSEEEDSNNRYPQDTEDEANKRHSIKGNNEFTSDIQLNENCPNTSFRKLVCSELEDSDEERNKYSKTADVTCINETSKSFDISCVPESSFVPETAIESGTDTTSGAVSSGQCLEVSMNNELKPFTLSARRRLTKLSHNSDMMDAEIPDSSPKEALQDFIDENMETTIIKVMDECSRVDFKLKSTLVESSPLLETDMVQNLWKKLRQMDLRQHTISEQPGASQVVKLASGLSNLISEADLFHNYQHKHDISEPRSFVSNEATTSYNDETMMSTVIVHGFCSYVKLITDVGSKFGCANMIDLTSEMLASTTNTMALGKLSRQDLAQNTVIYTGKELELNNPISNVKKSENEASLFEVVQSIVPARISLALKGDIFYEYLSSMRQISRSEAVRVSQCVEKKRRGRSQGFQHYLSRCTMLSPEAITLVSDSDLYKKISSQHTNVESTPL* 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3072 1215 PANTHER CHECKPOINT PROTEIN RAD17/RAD24-RELATED 110 1211 - -
Psa5g3072 1215 MobiDBLite consensus disorder prediction 74 95 - -
Psa5g3072 1215 MobiDBLite consensus disorder prediction 355 377 - -
Psa5g3072 1215 CDD AAA 399 460 - -
Psa5g3072 1215 MobiDBLite consensus disorder prediction 1 95 - -
Psa5g3072 1215 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 110 1211 IPR004582 GO:0006281
Psa5g3072 1215 Gene3D - 316 573 IPR027417 -
Psa5g3072 1215 MobiDBLite consensus disorder prediction 768 792 - -
Psa5g3072 1215 Gene3D - 579 643 - -
Psa5g3072 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 318 627 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3072 Psa-Chr5 237526140 237540238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3072 319 624 Core DNA Replication Machinery Family AT5G22010 21.698 5.80e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3072 - - gmx:100784209 1516.52