Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3051 ATGGGTGGTAATTCTCATTCCCCTTGTGCCTCATGCAAGCTCCTTAGACGCCGTTGTGCTAAGGATTGTATCTTTGCTCCTTATTTCCCTTCCCATGATCCTCAAAAGTTTGCAATAGTTCACAAGGTTTTTGGTGCCAGCAACGTCAGCAAAATAATCCAGGAACTTCCTGTTCAACAAAGAACAGATGCAGTAAGCAGTTTAGTGTATGAAGCTTATGCAAGAGTGAAAGATCCTGTTTATGGTTGTGTTGGAGCCATATCATATCTTCAAAACCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCACAAGCAGAAATACTCTATATCCAGATGCAACATGATGATGATGATGAGCCTGTAATGCAAATTCCAGAAATGGGAATGGTCCTTGATCATAACTTTCCTTCTTCAAGCAATGTAATTCATCATGATTCTCTCTCAAGAGAGAGTGTTTTTGGTTATGACGTCGTTTCTTGA 483 0.4037 MGGNSHSPCASCKLLRRRCAKDCIFAPYFPSHDPQKFAIVHKVFGASNVSKIIQELPVQQRTDAVSSLVYEAYARVKDPVYGCVGAISYLQNQVSELQMQLAVAQAEILYIQMQHDDDDEPVMQIPEMGMVLDHNFPSSSNVIHHDSLSRESVFGYDVVS* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3051 160 Coils Coil 87 107 - -
Psa5g3051 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 5 122 - -
Psa5g3051 160 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 122 - -
Psa5g3051 160 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Psa5g3051 160 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3051 Psa-Chr5 235519433 235520484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3051 1 135 AS2 family AT2G30130 76.296 1.97e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa5g3051 LOB 1.9e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3051 - - lang:109360574 231.876