Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3046 ATGGATTCCGAGTTTCCCAACAAAGCATTAACCACCACTCGCTTTTCCGACCTCAAACCCCCACTTTCCGATCCCGTTCTCCAAGCCCTCACACACTCCGCCTTCGATTTCTGCACTCCCGTTCAAGCCGCCACCATTCCCTTACTCTGCAGCTTCAAAGACGTCGCCGTCGACGCCGCCACCGGTTCCGGCAAAACCCTAGCTTTCGTCATTCCACTTGTCGAGATTCTTCGTCGCTCCTCTTCCAATCCCAAACCTCACCAGGTTCTGGGGATAATTATATCTCCTACAAGGGAACTAGCATCCCAAATATATCATGTTGCACAACCTTTTATTTCAACCTTAGCGAATGTTAAATCAATGCTACTAGTAGGCGGAGTGGAAGTGAAAACCGACATGCAGAAAATTGAGGAAGAAGGTGCCAATGTATTGATTGGCACGCCGGGCCGATTGCACGACATTATGAATAGGATGGATGTTATGGATTTCAAAAGTTTTGAGATTTTGATTCTGGACGAGGCTGATAGGCTCTTAGATATGGGATTCCAGAAGCAGATAAATGCTATCATAACTCAGTTACCTAAGCTTCGAAGGACTGGTTTATTCTCGGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGGTTGAGGAATCCTGTGCGGGTTGAAGTTCGAGCGGAAACAAAAACTGCAAATGGTGCTGCAGCATCAAATCAACTAGAATCTTCAAAGACACCTTCAGGTCTTCACACTGAGTACTTGAAATGCGAGGCTGATAAGAAGCCGTCGCAGCTAGTAGATTTCCTTATTAAGAACCGCTCAAAAAAAATTATAATATATTACATGACTTGTGCTTGTGTTGACTATTGGGGAGTTGTTCTTCCTCGCCTTTCTGTTTTGAAAGACTTCTCCTTGATTTCTCTTCATGGAAAGATGAAGCAGACTGTGAGGGAGAAGGCACTAGCTTCATTTACATCCCTCTCAAATGGAATTCTTCTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGCGTTGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTTTTCGTACATAGGGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGACATGCGGTTATCTTCTTATTACCAAAGGAGGAATCTTATGTAGAATTCTTGCGTATAAGAAGAATTCCACTTCAAGAAAGAACATGCTCCGACAATGCACCTGATGTTATACCCGAGATTCGTACTGCGGCAACAAAAGATCGCGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGGGCTTATAAAGAGCATCACTGCTCTTATATTCTCAGGTGGAAAGAACTTGAGATTGGCAAATTAGCCACAGGACATGGCTTATTGCAACTTCCTTTAGTGCCGGAGGTAAAACGCCACTCACTATCCACTGAGGGGTTTGAACCTGTGAAAGATATCAAATTCGAGGACATTAAGTTCAGGGATAAATCAAGGGAGAAACAAAGGAAGAAAAATCTGCAAACAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTAAAAAGCTAAAGAAAACTCCCAATGTACCCGATGTCATGAGGAAGAAAACAGCCAAACAAAGACGTGCTCAGCAGACTGTTGAAGACGATGAGGAGTTGACGCAAGAATACCGCTTGTTGAAGAAATTGAAGAAAGGGGTCATAGATGAGGATGAATATGCCAAATTGACAGGCACAGAAGACTTACTTTGA 1770 0.4412 MDSEFPNKALTTTRFSDLKPPLSDPVLQALTHSAFDFCTPVQAATIPLLCSFKDVAVDAATGSGKTLAFVIPLVEILRRSSSNPKPHQVLGIIISPTRELASQIYHVAQPFISTLANVKSMLLVGGVEVKTDMQKIEEEGANVLIGTPGRLHDIMNRMDVMDFKSFEILILDEADRLLDMGFQKQINAIITQLPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKTANGAAASNQLESSKTPSGLHTEYLKCEADKKPSQLVDFLIKNRSKKIIIYYMTCACVDYWGVVLPRLSVLKDFSLISLHGKMKQTVREKALASFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVIFLLPKEESYVEFLRIRRIPLQERTCSDNAPDVIPEIRTAATKDRDVMEKGVRAFVSYIRAYKEHHCSYILRWKELEIGKLATGHGLLQLPLVPEVKRHSLSTEGFEPVKDIKFEDIKFRDKSREKQRKKNLQTKKEAKEKEPKPKKLKKTPNVPDVMRKKTAKQRRAQQTVEDDEELTQEYRLLKKLKKGVIDEDEYAKLTGTEDLL* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3046 589 PANTHER RNA HELICASE 25 586 - -
Psa5g3046 589 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Psa5g3046 589 MobiDBLite consensus disorder prediction 504 558 - -
Psa5g3046 589 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Psa5g3046 589 Pfam Domain of unknown function (DUF4217) 417 472 IPR025313 -
Psa5g3046 589 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 419 IPR001650 -
Psa5g3046 589 CDD SF2_C_DEAD 254 384 - -
Psa5g3046 589 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Psa5g3046 589 Gene3D - 253 472 IPR027417 -
Psa5g3046 589 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Psa5g3046 589 SMART DUF4217_3 413 476 IPR025313 -
Psa5g3046 589 CDD DEADc_DDX55 26 224 - -
Psa5g3046 589 Gene3D - 3 227 IPR027417 -
Psa5g3046 589 SMART ultradead3 34 234 IPR014001 -
Psa5g3046 589 PANTHER ATP-DEPENDENT RNA HELICASE DDX55 25 586 - -
Psa5g3046 589 SMART helicmild6 290 375 IPR001650 -
Psa5g3046 589 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 394 IPR027417 -
Psa5g3046 589 Coils Coil 503 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3046 Psa-Chr5 235238097 235243306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3046 13 384 Eukaryotic Initiation Factors Gene Family AT3G19760 29.491 5.94e-43 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3046 K14809 - gmx:100801482 994.956