Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3043 ATGAGAGGCACCAAGGGTTATGAGCCACGTTCAAGCTCATCTTGTGCAGCTTGCAAATTACTTAAAAGAAGATGCACCCCAAATTGCCTATTTGCACCTTACTTTCACTCCAACGAGTGCAAAAAATTCGCCAAAGTCCACAAAGTATTTGGAGCAAGCAATGTTAGCAAAATACTCATTGAAGTCCCAGAAAAACAGCGAGAAGACACAGTGAATTCTTTGGCTTATGAAGCAGAAGCAAGACTTAGAGACCCGGTTTATGGATGCATTGGTGCCATAGCTTTGTTGCAGAGAAAGATGATGGAACTTCAACATGATCTGGACATTGCTAAAGATCGTCTTGCTCACTGTCGCGCTCTTGCTGCCACTGCCACTGCTACAACCACCGCGATAATTCCTTCTGTCGATTGTGTTACTTTGCCTCCTTTTCCTGAGTTTTCACCTTCTAATGATCTCAGTGATATCTTCTGTCATGGCTCTTCTTCTTCTCAGTTATCGACCCGGCTTGAAACCGTCGACGATTTTATTCAAATTCCATATATATTTTGA 549 0.4262 MRGTKGYEPRSSSSCAACKLLKRRCTPNCLFAPYFHSNECKKFAKVHKVFGASNVSKILIEVPEKQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMMELQHDLDIAKDRLAHCRALAATATATTTAIIPSVDCVTLPPFPEFSPSNDLSDIFCHGSSSSQLSTRLETVDDFIQIPYIF* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3043 182 Coils Coil 93 113 - -
Psa5g3043 182 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Psa5g3043 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 5 175 - -
Psa5g3043 182 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Psa5g3043 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3043 Psa-Chr5 234981984 234983431 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3043 5 152 AS2 family AT3G11090 63.514 5.79e-63 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa5g3043 LOB 8.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3043 - - cam:101504923 281.567