Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3025 ATGAGTAAGCTTCAAAGTGAGGCAGTGAGAGAAGCAATCTCAGGAATCATGGGTGATTCCAAGGACAAACAAAGGAAGTTTGTGGAAACTATTGAGCTTCAAATTGGGCTCAAGAACTACGATCCACAAAAGGACAAACGTTTCAGTGGCTCCGTCAAATTGCCACACATCCCTCGCCCCAAGATGAAGATTTGTATGCTTGGAGATGCCCAACACGTCGAAGAGGCAGAGAAAATAGGTTTGGAGTCGATGGATGTTGAAGCTTTGAAGAAGCTCAACAAGAATAAGAAGTTGGTGAAGAAACTAGCCAAGAGGTACCATGCCTTCTTAGCTTCTGAGGCAGTCATTAAGCAGATTCCCCGTCTCTTGGGTCCTGGTCTCAACAAGGCAGGCAAGTTTCCAACACTTGTCTCCCACCAAGAATCTCTTGAGGCAAAGGTTAATGAGACCAAGGCTATGGTCAAGTTTCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCCGTGGGCAATGTTAGCATGGACGAGAAGCAAATCTTTCAAAATGTTCAACTCAGTGTTAACTTCCTAGTCTCTTTATTGAAAAAGAACTGGCAGAATGTTCGATGCTTGTATTTGAAAAGTTCCATGGGAAAGTCTTACCGTGTCTTTTAG 651 0.4409 MSKLQSEAVREAISGIMGDSKDKQRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKRYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSSMGKSYRVF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3025 216 SUPERFAMILY Ribosomal protein L1 22 216 IPR023674 -
Psa5g3025 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 216 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Psa5g3025 216 Gene3D - 65 154 IPR016095 -
Psa5g3025 216 CDD Ribosomal_L1 7 215 IPR028364 -
Psa5g3025 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Psa5g3025 216 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 2 214 - -
Psa5g3025 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 214 - -
Psa5g3025 216 Pfam Ribosomal protein L1p/L10e family 22 210 IPR028364 -
Psa5g3025 216 Gene3D - 21 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3025 Psa-Chr5 233702219 233704533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3025 1 216 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 89.352 5.05e-131 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3025 K02865 - gmx:100527698 387.111