Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3022 ATGAATATGGAAAATCACAATGATTCTTCTGAGTGGCATAATTGGTCTCAATACACTGATCATTCACAGTTTCCTGCGCAAATTCTACCTCAAAATATCTCTGATTCTTCTTCTGCTTCTTTTCAATATAGTGAGTTTCAGTCTTGGTCTTTACCTGTTGAAGGAAGTTTAGAAGATAGAGCAGCAAGTGCTTCCAGGAGTCATAGTCAAGCAGAGAAAAGACGCAGAGATAGAATCAATACTCAGCTTGCTAATCTCAGAAAACTTATTCCTAAGTCTGATAAGATGGACAAAGCAGCTTTACTAGGGAGTGTAATAGATCATGTCAAAGACCTAAAGAGAAAAGCAATGGATGTTAGCCGAGTCATCACAGTTCCAACTGAAATCGACGAAGTATCCATAGACTACAACCATGTAATTGAAGACGAAACCAGCACTAACAAAGTGGACAAATTCAAGAACAATATAATCATCAAAGCTTCTGTTTGCTGCGACGATCGACCTGAACTGTTCTCTGAACTAATTCAAGTCCTCAAAGGGCTAAGACTTACGACAGTTAAAGCAGACATAGCAAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGTTCTAAGGACAGTGAAGAGAATGTTTGCATTAACACTCTCAAACAGTCCCTTAAATCAGCAGTGACCAAAATTGCTTCATCATCAATGGTATCTAATTGTCCTACTAGAAGTAAGAGGCAAAGGTTCTTTTTGCCTTCACATTTCGTATAG 762 0.3832 MNMENHNDSSEWHNWSQYTDHSQFPAQILPQNISDSSSASFQYSEFQSWSLPVEGSLEDRAASASRSHSQAEKRRRDRINTQLANLRKLIPKSDKMDKAALLGSVIDHVKDLKRKAMDVSRVITVPTEIDEVSIDYNHVIEDETSTNKVDKFKNNIIIKASVCCDDRPELFSELIQVLKGLRLTTVKADIASVGGRIKSILVLCSKDSEENVCINTLKQSLKSAVTKIASSSMVSNCPTRSKRQRFFLPSHFV* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3022 253 PANTHER TRANSCRIPTION FACTOR BHLH51 23 252 - -
Psa5g3022 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 116 IPR036638 GO:0046983
Psa5g3022 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Psa5g3022 253 Gene3D - 58 120 IPR036638 GO:0046983
Psa5g3022 253 CDD bHLH_AtAIG1_like 58 135 - -
Psa5g3022 253 SMART finulus 69 118 IPR011598 GO:0046983
Psa5g3022 253 CDD ACT_UUR-ACR-like 161 196 - -
Psa5g3022 253 PANTHER TRANSCRIPTION FACTOR BHLH30 23 252 IPR045847 GO:0003700|GO:0006355
Psa5g3022 253 Pfam Helix-loop-helix DNA-binding domain 66 112 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3022 Psa-Chr5 233307005 233309277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3022 3 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 44.776 2.61e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g3022 HLH 4.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3022 - - gmx:100799687 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3022 5 233307005 233309277 Psa5g3022 5 233307005 233309277 ECH