Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3011 ATGGAAACCAAGTTCCCAACCTCAATTTTACTTGAATTATCAGCGACCGATGATATTGAAACTTTCAAAACTGAAGTAGAACAAAAGGGTTGTGATGTAAACGAGGCAGGGTTTTGGTATTCTAGAAAAATTGGATCAAAGAATATGTGTTACGAAAAGAGAACACCTCTTATGATTGCTTCAATGTTTGGAAGCACTAGGGTTGTCAAATATATCATTCAAACAAACATGGTTGACGTCAACACGCCAGCTGGTTGTGAAAATGTCACTGCTTTACATTGTGCCATTGCTGGTGGCTCTGAATCAACCCTTGAAATTGTTAAGCTCTTAATTGATGCTGGAGCAGATTTTAATTCCCTTGATGAAATAATTAAGCAGAAACTTTCAGTGGCTAATTCAAAAGAATTAGTAGGAAGTGAGAAGAAAGAGTATCCTATTGATATATCATTGCCTGATATAAACGACAGTGTTTTTGGAACGGATGAGTTTAGAATGTATAGTTTCAAGGTGAAGACTTGCTCAAGGGGTTACTCTCATGATTGGACTGAGTGTCCATTTGTTCATCCAGGTGAGAATGCTAGGAGGAGAGATCCAAGGAAGTATCTTTATAGCTGTGTTCCGTGCCCCGAGTTTCGCAAAGGGACATGCCAGAACAAAGATGCATGTGAGTATTCACATGGTGTTTTTGAGTCCTTGCTCCACCCTTTACAATACAGAACAAGACTTTGTAAAGATGAGATAAAATGTTCTAGAAAAGTGTGTTTCTTTGCACATAAACATGAAGAGTTGAGGCCTTTGTATGCTTCTACTGGTTCAGCTATGCCTTCACTAGAGTCTTTACCAATTTCAAATGTTTCAACACCGCGAATCTCTCCATTGGTAGCCGCTTCATCTCCCAACAGTGGAAACTTGTGGCAGAATAAAATCAATCTTGCTCCACCTTCCTTGCAGCTTCCTAATAGGCAGCTGAAAAGTGCTTTGAGTGCAAAGGATTTGTATCAAGAAACAGACCTGTTACATGGTGTTTCAATGCAACCATCAACTCCTACTCAGTTGCAATCTATGAGTAGGCTTCAGTTGAACCAAAACAGGAACCATAATCAAGCAAGTTATCCCATCAACAACTTTGTTTCCTCTCCTCTAAGAAAATCATCAGCTTATGGATATGATTCATCTGCTGCTATGGCTGCAGCAGTGATGAATTCCAGATCTTCGGCCTTTGCGACACGAAGCCAAAGTTTTATGGATCGCGGTGTGGCAAGGCACCATATCAGTGCTTCTGAATCCAACAGAAGGATGAACTATGGATTTTCTGAAGGGATTTCTCATGATGGGGATGATCTGAACAAGTTCAAAAAGTCAGCTTCTTTTGGGTTTAGAAATACTATGGTAGGTGTGTCACAGCCAGAATATGTTGAACCGGATGTCTCTTGGGTTCATTCTTTGGTTTCTTCTGAGAGTTCTGAGGTATATGGTGCTGAGAAGCAGCACTATAATCTCTTTAAACAAATGTCATCTCCATGGGCAGAGCAGATTGTAGCATAA 1545 0.4013 METKFPTSILLELSATDDIETFKTEVEQKGCDVNEAGFWYSRKIGSKNMCYEKRTPLMIASMFGSTRVVKYIIQTNMVDVNTPAGCENVTALHCAIAGGSESTLEIVKLLIDAGADFNSLDEIIKQKLSVANSKELVGSEKKEYPIDISLPDINDSVFGTDEFRMYSFKVKTCSRGYSHDWTECPFVHPGENARRRDPRKYLYSCVPCPEFRKGTCQNKDACEYSHGVFESLLHPLQYRTRLCKDEIKCSRKVCFFAHKHEELRPLYASTGSAMPSLESLPISNVSTPRISPLVAASSPNSGNLWQNKINLAPPSLQLPNRQLKSALSAKDLYQETDLLHGVSMQPSTPTQLQSMSRLQLNQNRNHNQASYPINNFVSSPLRKSSAYGYDSSAAMAAAVMNSRSSAFATRSQSFMDRGVARHHISASESNRRMNYGFSEGISHDGDDLNKFKKSASFGFRNTMVGVSQPEYVEPDVSWVHSLVSSESSEVYGAEKQHYNLFKQMSSPWAEQIVA* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3011 514 Gene3D - 3 144 IPR036770 -
Psa5g3011 514 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 6 339 - -
Psa5g3011 514 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 339 512 - -
Psa5g3011 514 Gene3D - 203 265 - -
Psa5g3011 514 ProSiteProfiles Zinc finger C3H1-type profile. 202 229 IPR000571 GO:0046872
Psa5g3011 514 PANTHER UNKEMPT FAMILY MEMBER 6 339 IPR045234 -
Psa5g3011 514 PANTHER UNKEMPT FAMILY MEMBER 339 512 IPR045234 -
Psa5g3011 514 SUPERFAMILY Ankyrin repeat 8 123 IPR036770 -
Psa5g3011 514 ProSiteProfiles Ankyrin repeat profile. 87 122 IPR002110 GO:0005515
Psa5g3011 514 SMART ANK_2a 52 82 IPR002110 GO:0005515
Psa5g3011 514 SMART ANK_2a 87 119 IPR002110 GO:0005515
Psa5g3011 514 ProSiteProfiles Ankyrin repeat region circular profile. 87 122 - -
Psa5g3011 514 Pfam Ankyrin repeats (3 copies) 29 119 IPR002110 GO:0005515
Psa5g3011 514 SMART c3hfinal6 202 228 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3011 Psa-Chr5 231743586 231745354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3011 138 345 C2H2 Transcription Factor Family AT5G12850 54.468 5.85e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Psa5g3011 Ank_2 2.4e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3011 - - mtr:MTR_3g070880 775.778