Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3007 ATGGAAGCAAAGGAACAAGATGTTTCACTGGGAGCCAACAAATTCCCAGAGAGACAACCCATCGGTATTGCAGCTCAGAGCCATGACGACGGTAAGGACTACAAAGAACCACCTCCTGCACCGTTGTTTGAGCCTTCTGAACTCACTTCATGGTCTTTCTGGAGAGCTGGAATAGCCGAGTTCGTTGCAACTTTTCTGTTTCTCTACATCACCATCTTGACTATCATGGGTGTCAACAAATCTGATTCCAAGTGTAAAACTGTTGGTATTCAAGGGATTGCTTGGTCTTTTGGTGGCATGATCTTCGCCCTCGTTTACTGCACTGCCGGAATCTCTGGGGGTCACATAAACCCAGCAGTGACATTCGGTTTGTTCTTGGCGAGGAAGCTGTCTCTAACAAGAGCAGTGTTCTACATCGTGATGCAGGTTCTTGGTGCTATCTGCGGTGCTGGTGTGGTTAAGGGTTTCGAAGGAAAAGCCTTCTACGGAAAAGTTCACGGTGGTGCTAACTTTGTTGCTCCTGGTTACACAAAAGGAGATGGACTCGGTGCTGAGATTATCGGTACCTTTGTTCTTGTCTACACCGTTTTCTCAGCCACTGATGCCAAACGTAGTGCCAGAGACTCTCACGTTCCTATTTTGGCACCTTTGCCAATTGGGTTCGCTGTGTTTTTGGTTCACTTGGCTACTATTCCAATTACTGGAACTGGTATCAACCCTGCTAGGAGTCTTGGTGCTGCAATTATCTTCAACAAAGATCTTGGTTGGGATGATCAATGGATTTTCTGGGTTGGACCATTCATTGGTGCAGCACTTGCAGCACTTTACCACACAGTTGTTATCAGAGCCATTCCTTTCAAGTCAAGTTGA 870 0.4644 MEAKEQDVSLGANKFPERQPIGIAAQSHDDGKDYKEPPPAPLFEPSELTSWSFWRAGIAEFVATFLFLYITILTIMGVNKSDSKCKTVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQVLGAICGAGVVKGFEGKAFYGKVHGGANFVAPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDQWIFWVGPFIGAALAALYHTVVIRAIPFKSS* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3007 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g3007 289 SUPERFAMILY Aquaporin-like 47 282 IPR023271 -
Psa5g3007 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Psa5g3007 289 PANTHER AQUAPORIN PIP1-2-RELATED 1 288 - -
Psa5g3007 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g3007 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g3007 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g3007 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g3007 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g3007 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g3007 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Psa5g3007 289 Pfam Major intrinsic protein 47 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g3007 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 288 IPR034294 -
Psa5g3007 289 TIGRFAM MIP: MIP family channel proteins 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3007 Psa-Chr5 231127859 231130365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3007 1 288 Major Intrinsic Protein MIP AT3G61430 84.375 1.09e-167 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3007 K09872 - gmx:100791447 542.732