Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2994 ATGGCATCACCGTGGCACCAGTCGCCACCGCCAACCCAACTTTCCGACTCTGATTCCGACGGAGAATCATCCACCTCCAAACTACTCCGCCACTCAGACCTCTCCGAATCGATATTCAAATCCTACTTCAATTTCTCCGGCCACTCCTCAACCAATGCCACCTCCGCCGACCTATCCAAGATCCAATCCTTCCTCACCTCCTCCTCCTCCGGCGCTCTTTCCTGTCTCATATGTCTTGAGCGCATCAAACCTTCCGATCCCACCTGGTCCTGCACCTCCCTCTGCTTCGCAGTCTTCCATCTCTTCTGCATCCAAAGCTGGTCCCGTCAAGCTTCCGATCTCGCCGCCGCACGTGCCGTCACTCGCCTTTCCATTTCCCAGGATCAAGCCTCCGAAACATCTCTCTGGAATTGCCCCAAATGTAGGGTAGAATATCCCAAAAGCCTCATCCCCAAAACCTACCTCTGCTTCTGTGGCAAATTGGAGAATCCTCCCAGTGATGATCCTTGGGTTTTACCTCATTCTTGTGGTGAAGTTTGTGGTAGATCTTTGAAGAATAATTGTGGACACCGGTGTTTGCTTCTCTGCCATCCCGGGCCATGTCCATCTTGCCCCCAACTCGTTAAAGCTCGATGCTTTTGTGGATCCCATCAAGACACTCGAAGATGCGGTTTCAAAGAGTTTTCTTGTGAAGCCCCATGTTCCAAGGTGTTGGGTTGTGGTGTTCATAGGTGCGCTGAGATTTGCCACCGTGGTACCTGTCCACCATGCAGAACACGTGGCGTTTATAGGTGTCAATGTGGGAAGGTGAAAGAGGAGAGGGAATGTTGTGATCGTGTTTTCCAATGTGACGATCCTTGTGAGAAGAAGCTTAGTTGTGGGAAGCATGTTTGTCAAAAAGGGTGTCATTCTGGTGAGTGTGGTGAGTGTCCTTTACAAGGGAGGAGAACATGTCCTTGTGGTAAAAGGGTCTATGAAGGAATGCCTTGTGATGCTCCTATGCAGGTCTGCGGGGCTACATGCGATAAAATGTTACCATGTGGGTATCATAGGTGCCATGAGCGATGCCATCGTGGACAGTGTATTGAGACTTGCAGGATTGTAGTTAGGAAGTGTTGTCGCTGTGGTAGCCTCAAGAAAGATGTACCTTGCTATCAAGATTTGGCATGTGAGAGGAAGTGCCTGACGATGCGTGACTGTGGCCGGCATCCATGTAAACGCCGCTGCTGTGATGGGGATTGTCCTCCATGTTCAGAGATATGTGGCAGGAGGCTTCGCTGTAGAAACCATAAATGCCAATCTCCATGCCACAGAGGTCCCTGTGCTCCTTGTCCTATAATGGTGACAATATCATGTGCATGTGGGGAGACACATTTTGAGGTTCCTTGTGGTACTGAAATGGATCAAAAGCCTCCCAGATGTCGTAAAAAATGTCCTATTATGCCTTTATGTCGGCATGCCTCAATCTGCAAGCCGCACAAATGCCATTATGGAGCATGCCCTCCTTGTCGCCTACCTTGTGGAGAAGAGTACCAATGTGGCCATGCATGCAAATTAAGGTGTCATGGTGCAAGGCCTCCTCCTAAGCCCGAGTTTACTCTCAAACCAAAGAAAAAGAAGAATATACAACAGAGTGAAAGTATCCCCGGCACTCCATGCCCTCCTTGCCCAGAACTAGAATGGAGACCTTGTGTTGGGCAGCACATTGGAGCCGAGCAGATGATGGTCTGCTCTAATAAATCACAGTTCTCCTGTGAAAATCTATGTGGCAATCCTCTACCATGTGGCAATCATTATTGTACTAAAACTTGCCATCCCTTGGAGAACCGGTCTCCCACGAAACAGTTACTGAAAAGTGAGGCTTGTGAAGATTGTTCGCTTTCTTGCCAAAAGGAAAGAAAGCCTACGTGTCAACATCACTGTCCTCGGCGATGCCATCCTGGAGACTGCCCCCCATGCAAGGTGCTAATTAAACGGTCATGTCATTGTGGTGCGATGGTCCATGCTTTTGAATGCATTTATTACAACGGCCTGTCTGCAAAGGATCAAGAGACTGCCCGGTCATGTGGTGGACCTTGTCATAGAAAGATGCCAAATTGTACCCATCTATGCCCAGAGACATGTCATCCTGGTCAATGCCCAAATCCTGAGAAATGCTGTAAAAAGGTCACTGTTCGTTGCAAATGCCAAACGCTGAAAAAGGAGTGGCTTTGTCAAGATGTTCAAGCAGCACATAATCGTGCCGGTCGCGACCCAAGTGATATACCAAAAAATCAATTTGGAGTTGGACTTATTCCTTGTAATTCTGACTGTGAGAGGAAAGTGCAGGTTGTTGAGTCAGAACTGCAATTGCGTAAATCTAGAGTTACAGAGGTAAAGGAGCCAGATAATGAAAAATCAATTCCAAAGCGACGTAAAAAGCGAGACCGGGTAGTAGAGTCCAATGAACCGACAACATTACAGAAAATGATTTCCAGAACAAAGCAGTTTTTTCTGTTTGTGTTTCTCTTGGTCATACTTGTTGCTGCTACTCATTATGGGTACAAGGGACTACTATGGCTCAATGATTGGATGAATAAAGTCGATGAACAAAGACATAGATCTTCGCGAATTAGATGA 2619 0.4761 MASPWHQSPPPTQLSDSDSDGESSTSKLLRHSDLSESIFKSYFNFSGHSSTNATSADLSKIQSFLTSSSSGALSCLICLERIKPSDPTWSCTSLCFAVFHLFCIQSWSRQASDLAAARAVTRLSISQDQASETSLWNCPKCRVEYPKSLIPKTYLCFCGKLENPPSDDPWVLPHSCGEVCGRSLKNNCGHRCLLLCHPGPCPSCPQLVKARCFCGSHQDTRRCGFKEFSCEAPCSKVLGCGVHRCAEICHRGTCPPCRTRGVYRCQCGKVKEERECCDRVFQCDDPCEKKLSCGKHVCQKGCHSGECGECPLQGRRTCPCGKRVYEGMPCDAPMQVCGATCDKMLPCGYHRCHERCHRGQCIETCRIVVRKCCRCGSLKKDVPCYQDLACERKCLTMRDCGRHPCKRRCCDGDCPPCSEICGRRLRCRNHKCQSPCHRGPCAPCPIMVTISCACGETHFEVPCGTEMDQKPPRCRKKCPIMPLCRHASICKPHKCHYGACPPCRLPCGEEYQCGHACKLRCHGARPPPKPEFTLKPKKKKNIQQSESIPGTPCPPCPELEWRPCVGQHIGAEQMMVCSNKSQFSCENLCGNPLPCGNHYCTKTCHPLENRSPTKQLLKSEACEDCSLSCQKERKPTCQHHCPRRCHPGDCPPCKVLIKRSCHCGAMVHAFECIYYNGLSAKDQETARSCGGPCHRKMPNCTHLCPETCHPGQCPNPEKCCKKVTVRCKCQTLKKEWLCQDVQAAHNRAGRDPSDIPKNQFGVGLIPCNSDCERKVQVVESELQLRKSRVTEVKEPDNEKSIPKRRKKRDRVVESNEPTTLQKMISRTKQFFLFVFLLVILVAATHYGYKGLLWLNDWMNKVDEQRHRSSRIR* 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2994 872 CDD NF-X1-zinc-finger 337 386 - -
Psa5g2994 872 MobiDBLite consensus disorder prediction 788 816 - -
Psa5g2994 872 CDD NF-X1-zinc-finger 625 666 - -
Psa5g2994 872 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 15 869 - -
Psa5g2994 872 CDD NF-X1-zinc-finger 176 224 - -
Psa5g2994 872 SUPERFAMILY RING/U-box 74 147 - -
Psa5g2994 872 CDD NF-X1-zinc-finger 283 330 - -
Psa5g2994 872 MobiDBLite consensus disorder prediction 788 815 - -
Psa5g2994 872 CDD NF-X1-zinc-finger 390 438 - -
Psa5g2994 872 CDD NF-X1-zinc-finger 230 278 - -
Psa5g2994 872 CDD NF-X1-zinc-finger 417 465 - -
Psa5g2994 872 Pfam NF-X1 type zinc finger 188 205 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 Pfam NF-X1 type zinc finger 638 654 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 Pfam NF-X1 type zinc finger 293 311 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 Pfam NF-X1 type zinc finger 347 365 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 Pfam NF-X1 type zinc finger 421 445 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 Pfam NF-X1 type zinc finger 400 418 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 Pfam NF-X1 type zinc finger 595 606 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 Pfam NF-X1 type zinc finger 494 504 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 Pfam NF-X1 type zinc finger 240 258 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 MobiDBLite consensus disorder prediction 1 22 - -
Psa5g2994 872 SMART znfxneu3 293 312 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 513 558 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 400 419 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 700 722 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 595 627 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 347 367 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 427 446 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 214 236 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 490 505 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 240 259 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 188 206 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 SMART znfxneu3 637 655 IPR000967 GO:0005634|GO:0008270
Psa5g2994 872 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 15 869 IPR034078 GO:0003700
Psa5g2994 872 MobiDBLite consensus disorder prediction 1 29 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Psa5g2994 zf-NF-X1 0.00023 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2994 K15683 - gmx:100799540 1556.19