Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2993 ATGGATGATTCCAATTACCTGTTTCCTATCGGTATGCGTATTCTTGCAGTTGACCATGATCCCACTTGCCTTCAAGTTTTAGAAAATCTTCTCCAAACATATCAATACCATGTAACCACGACTAATGAAGGAATAACAGCATTGGCTATGTTGCAAGAAAACAAAGACAACTTTGATCTGGTAATCATTGATGTGCACATACCAGACATGGATGGATTTAAGCTCCTTGAACTAGTGGGAGTTGAGATGAACCTTCCTGTCATAATGTTGTCTGCATGTCATGATACGAAGCTGGTGATGAAGGGAATTTCCCACGGTGCCTGTGATTATCTACTGAAACCTGTGAGATTAGAGGAGTTAAAGAACCTTTGGCAGCATGTAATTAGGAGGAAGAACCCCCGAGGAGTTGTTTGGTCTGTCGAATTGCACCGCAAGTTTGTCGCTGCTGTTAATCACCTAGCCATTGACAAGGCGGTACCAAAAAAAGTTCTCAATACCATGAATGTCGAAAATATTACAAGGGAGGACGTAGCCAGCCATCTCCAGAAGTATAGGCTTTATCTGAAAAGAATTAGCTGTATTGCAAACCTGTAG 594 0.4158 MDDSNYLFPIGMRILAVDHDPTCLQVLENLLQTYQYHVTTTNEGITALAMLQENKDNFDLVIIDVHIPDMDGFKLLELVGVEMNLPVIMLSACHDTKLVMKGISHGACDYLLKPVRLEELKNLWQHVIRRKNPRGVVWSVELHRKFVAAVNHLAIDKAVPKKVLNTMNVENITREDVASHLQKYRLYLKRISCIANL* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2993 197 Gene3D - 11 132 - -
Psa5g2993 197 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 135 186 IPR006447 GO:0003677
Psa5g2993 197 PANTHER TWO-COMPONENT RESPONSE REGULATOR 131 194 - -
Psa5g2993 197 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 133 - -
Psa5g2993 197 SUPERFAMILY CheY-like 11 135 IPR011006 -
Psa5g2993 197 Pfam Response regulator receiver domain 14 122 IPR001789 GO:0000160
Psa5g2993 197 Gene3D - 133 192 - -
Psa5g2993 197 SMART REC_2 12 124 IPR001789 GO:0000160
Psa5g2993 197 CDD REC_typeB_ARR-like 14 128 - -
Psa5g2993 197 PIRSF RR_ARR_type-B 1 134 IPR017053 GO:0003677|GO:0003700|GO:0009736
Psa5g2993 197 PIRSF RR_ARR_type-B 130 196 IPR017053 GO:0003677|GO:0003700|GO:0009736
Psa5g2993 197 SUPERFAMILY Homeodomain-like 134 190 IPR009057 -
Psa5g2993 197 PANTHER TWO-COMPONENT RESPONSE REGULATOR 131 194 IPR045279 GO:0009736
Psa5g2993 197 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 133 IPR045279 GO:0009736
Psa5g2993 197 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2993 Psa-Chr5 230447550 230449440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2993 8 192 Response Regulator Gene Family AT4G31920 55.411 3.96e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa5g2993 Response_reg 1.5e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2993 - K14491 rcu:8274205 280.411