Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2976 ATGGAAGGTGTGCTTTACTGTAAACCTCATTTTGAGCAGCTCTTCAAGGAGCATGGCAATTTCAGCAAGAATTTTCAGTCACCTGCAAAACCAGCTGACAAAGCAACCCCTGAGCTGACAAGGTCCGCTAGTAAAGCTGCTGGCATGTTTTCTGGGACACAAGAGAAGTGTGCTACGTGTGGCAAAACTGCTTATCCATTGGAGAAGGTAACAGTGGAAAGCCAGGCCTATCACAAATCATGTTTCAAGTGTTCACACGGCGGTTGTCCTATAACGCCATCAAATTATGCAGCCCTAGAGGGAATTTTGTATTGCAAGCACCATTTCTCTCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTGATCAAGTCTGCGTCAATCAAACGTGCAGCAGCCTCCGTTCCAGAATCTTGA 417 0.4532 MEGVLYCKPHFEQLFKEHGNFSKNFQSPAKPADKATPELTRSASKAAGMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPES* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2976 138 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 1 25 - -
Psa5g2976 138 CDD LIM2_SF3 57 117 - -
Psa5g2976 138 ProSiteProfiles LIM domain profile. 55 115 IPR001781 -
Psa5g2976 138 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 1 138 - -
Psa5g2976 138 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 49 82 - -
Psa5g2976 138 Pfam LIM domain 57 112 IPR001781 -
Psa5g2976 138 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 83 122 - -
Psa5g2976 138 SMART lim_4 56 108 IPR001781 -
Psa5g2976 138 PANTHER OS06G0237300 PROTEIN 1 138 IPR045268 GO:0051015
Psa5g2976 138 Gene3D Cysteine Rich Protein 51 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2976 Psa-Chr5 229029067 229032647 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa5g2976 LIM 8.8e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2976 K09377 - egr:104454362 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2976 5 229029067 229032647 Psa5g2976 5 229029067 229032647 ECH