Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2964 ATGGATGAGAGAAGCATGTCAGGCTTTTGTATTAGAAGTGGAAGCTGTGTTCGTAGTGCCAGTACTACTACTGGCACTAAATGTGGGCGTTGGAATCCAACTAACGAACAAGTTAAGGTTCTGACTGAACTTTTCAGTTCAGGACTTCGAACTCCAAGTACGGATCAGATTCAGAAAATCTCTACTCAGCTTAGTTTTTACGGTAAGATTGAGAGCAAAAATGTTTTCTATTGGTTTCAAAATCATAAGGCTAGGGAAAGACAGAAGCGTCGTCGCAAGGTTTCATCCTCGGATGATGACGATGATAACAGTATTCGTCGAGAAAATACTATGTCCAGAAATTCTTCTTCACAAAATTTTGCTCAGCTCTATCAGGTTTCGGAGCACAGGAGGGTGATTGAGACCCTTGAGCTTTTTCCCTTGAACTCATTTGGTGAATCAGGATCAAAGAATTTGAGCAACTATACAAATGATTGCAGAGATAATAATAATAATAATATGTTTTCATACACAATGAGGGAACAAATGGATCATCCACCATTAGATCTTTGTTTAAGCTTTATGTGA 567 0.3862 MDERSMSGFCIRSGSCVRSASTTTGTKCGRWNPTNEQVKVLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRRKVSSSDDDDDNSIRRENTMSRNSSSQNFAQLYQVSEHRRVIETLELFPLNSFGESGSKNLSNYTNDCRDNNNNNMFSYTMREQMDHPPLDLCLSFM* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2964 188 CDD homeodomain 30 90 IPR001356 GO:0003677
Psa5g2964 188 Gene3D - 27 94 - -
Psa5g2964 188 SMART HOX_1 26 93 IPR001356 GO:0003677
Psa5g2964 188 ProSiteProfiles 'Homeobox' domain profile. 24 89 IPR001356 GO:0003677
Psa5g2964 188 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 175 IPR044555 GO:0003700|GO:0099402
Psa5g2964 188 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 175 - -
Psa5g2964 188 SUPERFAMILY Homeodomain-like 29 91 IPR009057 -
Psa5g2964 188 MobiDBLite consensus disorder prediction 91 108 - -
Psa5g2964 188 MobiDBLite consensus disorder prediction 87 120 - -
Psa5g2964 188 Pfam Homeodomain 28 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2964 Psa-Chr5 228652781 228654487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2964 9 188 Wox Gene Family AT3G11260 51.282 2.80e-52 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Psa5g2964 Homeodomain 2.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2964 - - gmx:100791433 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2964 5 228652781 228654487 Psa2g0809 2 49409820 49411038 PCT