Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2921 ATGAACATTCTCAACAAACACACCATCGGAAATGATGTCGGAAAGGCTCACGTTGTTCACGTCGACAACATTCAAAATGCTTCTCCCCGGAACTCCACCGCCGAGAAAGGAAGAGTGTCGTCTGTATCTGTGTCTGAGTGTCGTGTTGATTTGGATCTGAAGAGCGATGATGTCAATGTCAAGACACGCTTGGGTAACGTTAAGAGGGATTGTAGAATTTGCCACCTCAGCATGGATATGAAAAACCAAGGTGAACATGAATCTGAGACTCCCATTGAACTAGGATGTTCCTGTAAAGATGATTTGGCTGCTGCCCATAAACAATGTGCTGAAATATGGTTCAAGATCAAGGGTAACAAAACTTGTGAAATCTGTGGATCCATTGCTAGCAATGTAGCTGGTCATGGAGTTGAAGTTGAAATGACAGAACAACAGAATGAAGTTAATGATGCATCCATGCTACCACCAACTGAACCTGCTGCACCATCAGAAACTCGAAGTTTCTGGCGTGGGCAATGGTTCTTGAATTTCATCCTTGTCTGTATGATCTTTGCCTTTGTCCTATGCTGGCTTTTTCACTTCAATATGCTTTCTTGA 597 0.4305 MNILNKHTIGNDVGKAHVVHVDNIQNASPRNSTAEKGRVSSVSVSECRVDLDLKSDDVNVKTRLGNVKRDCRICHLSMDMKNQGEHESETPIELGCSCKDDLAAAHKQCAEIWFKIKGNKTCEICGSIASNVAGHGVEVEMTEQQNEVNDASMLPPTEPAAPSETRSFWRGQWFLNFILVCMIFAFVLCWLFHFNMLS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2921 198 ProSiteProfiles Zinc finger RING-CH-type profile. 63 132 IPR011016 GO:0008270
Psa5g2921 198 SMART ringv_2 70 126 IPR011016 GO:0008270
Psa5g2921 198 CDD RING_CH-C4HC3_MARCH 71 126 - -
Psa5g2921 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 134 IPR013083 -
Psa5g2921 198 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 28 197 - -
Psa5g2921 198 Pfam RING-variant domain 71 125 IPR011016 GO:0008270
Psa5g2921 198 PANTHER ZINC FINGER, RING-CH-TYPE 28 197 - -
Psa5g2921 198 SUPERFAMILY RING/U-box 69 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2921 Psa-Chr5 225604592 225606138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2921 38 198 C3H Transcription Factor Family AT5G05830 56.790 2.81e-54 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2921 - - gmx:100818979 226.868