Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2920 ATGGCTCCTCCTTCAGATATCAACCATCTCTCTAACCCTTGCATATATGGGGATTTTTCTTCTTCATACTCAGAGAGAAAATCTGGTTTTATGAAATGGTTTGGTAAGATTTTCAAAATCGGGTCAAATAGAGGAAGAGTCGGGGGTCATCATCTTCAGCAGCCTATAGAGGAAAACATGGCTTGGCGAGCTCCACCTAGATCGTTGGATAACCGAGCTAGAACGAAGAAAGAGGACGAGGATTTGAGCAATGCGATTGCACTTTCTTTAAATGAAGATTTGAAGATACCAGCAGGATATAGATGGCGAACGGGAGCTGATGATGATTATGCAAAAGGACTTCAGGATCGCATGCATTCATCGCTACACCCTCCGTATGCCCCTTTACCGTATTATCCCCGGGGATACAGCATGCCATCGCATACCAGATTATGTGGAGGGTGCAACAAAGAGATACTCTACGGGAATTGTTTGGGAGTTGAACAAAGTTATTTTCATCCAGACTGCTTCCGGTGTCACTCTTGTCATCATCCTATTACCGAGCGCGAGTTTTCTTTGTCAGGGAAGCATCCGTATCACAAATATTGTTTTAAAGAATTGAGCCATCCTAAATGTGAAGTTTGCCATCATTATATACCTATAAATGGTTCTGGTTTGATTGAGTATAGGTGTCACCCCTATTGGAACCAAAAGTACTGTCCATCTCATGAATATGACAATACATCTCGCTGTTGTAGCTGTGAAAGATTAGAGTCTCGGGGAGAAAGATACTTTAGATTGGACGATGGACGGATTTTGTGCTTTGAGTGCATGGAATCTGCTATAACAGATACCGGCGAATGTCAACCTCTTTATCATGCTATTAGAGACTATTATGAAGGAATGAATATGAGAATCGATCAACAAATCCCGATGCTACTAGTTGGGAGAGAAGCACTTAATGAAGCCATTGTTGGAGAGAAGAATGGTTACCATCACGTTCCAGAAACACGAGGCTTATGCCTTTCAGAAGAGCAAACCGTCACCAGTGTACATAAATGGTCAAAAATAGGTGGACATCGATTAATTGGGATGCGAGGTCAACCTCAAAAGTTGATTCGAAGATGTGAAGTTACAGCTATTCTTGTTCTATATGGTCTTCCGAGGTTACTCACAGGTGCTATCCTCGCGCATGAGTTGATGCACGGTTGGTTACGACTTAAAGGTTACCGTAATCTTGATCCTGCCGTAGAAGAAGGTATTTGTCAGGTTCTTTCTTACATGTGGCTTGACGCAGAAGTTATGTCAGGTTCTAGAACCAGGCCATCGATATCAGCGGCTTCTTCGTCCTCCTCCTCTTCCGCATCCTCCTACTCGTCAAAGAAAGGTGTGAAATCCAAAGTTGAAAATAAATTGGGTGAGTTTTTCATGAACCAGATTGCTAATGATTCTTCACCGGCTTACGGTGGAGGCTTTAGATCAGCTAATGCAGCGGTTAATAAATACGGTTTACGTTGTACTCTCGACCATATTCGTTTGACTGGTCAGTTCCCTATGTAA 1539 0.4263 MAPPSDINHLSNPCIYGDFSSSYSERKSGFMKWFGKIFKIGSNRGRVGGHHLQQPIEENMAWRAPPRSLDNRARTKKEDEDLSNAIALSLNEDLKIPAGYRWRTGADDDYAKGLQDRMHSSLHPPYAPLPYYPRGYSMPSHTRLCGGCNKEILYGNCLGVEQSYFHPDCFRCHSCHHPITEREFSLSGKHPYHKYCFKELSHPKCEVCHHYIPINGSGLIEYRCHPYWNQKYCPSHEYDNTSRCCSCERLESRGERYFRLDDGRILCFECMESAITDTGECQPLYHAIRDYYEGMNMRIDQQIPMLLVGREALNEAIVGEKNGYHHVPETRGLCLSEEQTVTSVHKWSKIGGHRLIGMRGQPQKLIRRCEVTAILVLYGLPRLLTGAILAHELMHGWLRLKGYRNLDPAVEEGICQVLSYMWLDAEVMSGSRTRPSISAASSSSSSSASSYSSKKGVKSKVENKLGEFFMNQIANDSSPAYGGGFRSANAAVNKYGLRCTLDHIRLTGQFPM* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2920 512 CDD LIM 172 227 - -
Psa5g2920 512 CDD LIM_DA1 145 197 - -
Psa5g2920 512 ProSitePatterns LIM zinc-binding domain signature. 145 179 IPR001781 -
Psa5g2920 512 PANTHER PROTEIN DA1-RELATED 2 20 512 IPR045218 -
Psa5g2920 512 Pfam Protein DA1 294 507 IPR022087 -
Psa5g2920 512 SMART lim_4 144 196 IPR001781 -
Psa5g2920 512 Pfam LIM domain 145 198 IPR001781 -
Psa5g2920 512 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 236 - -
Psa5g2920 512 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 20 512 - -
Psa5g2920 512 ProSiteProfiles LIM domain profile. 143 203 IPR001781 -
Psa5g2920 512 Gene3D Cysteine Rich Protein 139 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2920 Psa-Chr5 225203707 225206933 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa5g2920 DA1-like 1.2e-96 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2920 - - gmx:100798829 891.723