Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2909 ATGGCTGGAATGTGCTGTGGCTTTGTTGGAGAAGGTGACTCTTCGGCGAATTCACGTCCTTCTAGACGCCGGAATTTGGACATGCTACCTTTCAAATACATCGCTGACATGACTGTTGCACCATCCGGAACTTCACGGAAACGCCGTCAAGCGGATCTCAGCGGTAAGAAAGATTTTGAAAGCTGTGAGGGCTCAAACGGTGACCGTGGAAACGAGAAGAGTAAGAAGAACAAGAACGAATCCTCCAAGGTTTCTGAAAATAAACCTTCAACAGAAGGTAATTTGGAAGATGGAGAGTTCCCGAAGTTTGGAGTTACTTCGGTTTGTGGTAGAAGAAGAGACATGGAAGATTCTGTTTCCGTTCAAACTTCTTTCTACGAAGAACTGTTTCACTTTTTCGGTGTTTTCGACGGTCACGGCTGCTCTCATGTTGCGACTATGTGTAAGGAGAGACTCCATGAGATTCTGAAGGAACAGATCAATGAATCGCAAGAGAATTTCGAGTGGAACAGCACTATGCAACAAGGCTTTGCTCGCATGGATGACGAAGTGCAGAGATGGAATAGCAGCAGCCAAACTGTTACTTGTAGGTGCGAGCTTCAAACTCCTCACTGCGACGCAGTTGGATCTACTGCCGTGGTTGCTGTTGTCACTCCTGACAAAATCATTGTCTCTAACTGCGGCGATTCTCGCGCTGTTCTCTGCCGTAACGGCGTCGCCATCCCACTCTCCTTCGATCACAAGCCGGATCGACCAGACGAGTTGATCAGAGTCGAAGCTGCAGGAGGGCGGGTGATCTACTGGGATGGACCAAGAGTGCTTGGTGTACTTGCCATGTCTAGAGCAATAGGCGACAATTATTTGAAGCCGTATGTGATATCTGAACCTGAAGTAACTGTTACGGAGAGAAGAGTTGAAGACGAGTGTTTGATACTGGCTAGTGATGGACTATGGGATGTTGTTTCAAACGAAACCGCATGTGGAGTTGTGAGGATGTGTTTGAAGGCGCATATGATGACTTCACCGGCTGAGTCTCCGGCTAACAACGAGGTGACTACTGATGGTTCTGATCAAGCATGTTCTGATGCGTCCATTCTGTTGACTAAGTTGGCTTTGGCAAGGCACAGTTCGGATAATGTGAGTGTGGTGGTGATTGATTTGAGGAAAGATCAACGACCAACATCAAACTCCAACTATAATTTAATTAATTAA 1212 0.467 MAGMCCGFVGEGDSSANSRPSRRRNLDMLPFKYIADMTVAPSGTSRKRRQADLSGKKDFESCEGSNGDRGNEKSKKNKNESSKVSENKPSTEGNLEDGEFPKFGVTSVCGRRRDMEDSVSVQTSFYEELFHFFGVFDGHGCSHVATMCKERLHEILKEQINESQENFEWNSTMQQGFARMDDEVQRWNSSSQTVTCRCELQTPHCDAVGSTAVVAVVTPDKIIVSNCGDSRAVLCRNGVAIPLSFDHKPDRPDELIRVEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERRVEDECLILASDGLWDVVSNETACGVVRMCLKAHMMTSPAESPANNEVTTDGSDQACSDASILLTKLALARHSSDNVSVVVIDLRKDQRPTSNSNYNLIN* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2909 403 CDD PP2Cc 102 387 IPR001932 -
Psa5g2909 403 ProSitePatterns PPM-type phosphatase domain signature. 132 140 IPR000222 GO:0043169
Psa5g2909 403 ProSiteProfiles PPM-type phosphatase domain profile. 102 387 IPR001932 -
Psa5g2909 403 SUPERFAMILY PP2C-like 102 388 IPR036457 -
Psa5g2909 403 MobiDBLite consensus disorder prediction 49 95 - -
Psa5g2909 403 PANTHER PROTEIN PHOSPHATASE 2C 37 40 391 - -
Psa5g2909 403 Pfam Protein phosphatase 2C 103 362 IPR001932 -
Psa5g2909 403 Gene3D - 98 396 IPR036457 -
Psa5g2909 403 PANTHER ALPHABET, ISOFORM E-RELATED 40 391 - -
Psa5g2909 403 SMART PP2C_4 92 385 IPR001932 -
Psa5g2909 403 SMART PP2C_SIG_2 116 387 IPR001932 -
Psa5g2909 403 MobiDBLite consensus disorder prediction 37 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2909 Psa-Chr5 223407977 223410832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2909 1 389 PP2C-type Phosphatase Gene Family AT3G11410 58.981 2.04e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2909 K14497 - gmx:100776356 551.977