Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa5g2907 | ATGGATGGCCTTCGAACATTCAATTTTCGTTTCAGAAATGCACTTACTATTTCAAAATTGCTGTTGCCTCTTGCTGTGGCTGCAATACCAGAAGGTCTTCCAGCTGTTATCACAACATGTTTAGCGCTCGGTACAAGGAAAATGGCGCAAAAGAATGCGATTGTGAAGAAGCTTCCAAGTGTTGAAACTTTGGGATGCACCACTGTGATTTGTTCCGATAAAACTGGCACGCTGACTACAATCAAATCGTTATTGTTGCGAACCGGATGGTCAAATCGGCTTCTTGTAAAGGGTGCTGTTGAGAGTTTATTGGAGCGAAGTTCGTTTGTGCAACTTGCAGATGGATCTCTTGTTCCAATAGATGATCAATGGAATTTTCAGACTATTCGAGACACTCATCCTGCACACAAGAAATTGCTTGATCCAACATACTATTCATCCATTGAAAGTGATTTAGTTTTTGTCGGCGTTGTTGGTTTAAGAGACCCTCCTAGAGAGGAAGTTCATAAAGAATTGAGGATTGCAAGCAAGCTGGAGGCAAGGTTTCTCGCGAGCCGAGCCAGACACAAGCAAGAAATTGTGAGACTATTGAAGGAAATGGGAGAGATTGTTGCAATGACCGGAGATGGCGTGAATGATGCACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGAATAACTGGAACGAGGTTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGATGACAATTTTAGTACTATTGTTTCAGCTATCGCTGAGGTCGAGCTTATTTACAATAACATGAAAGCATTTATAAGGTACATGATATCGTCAAATGCGGGAAGTGAATCGATATTCTTGGCAGCAGCTTTAGGGATCCAGAATGCATGA | 879 | 0.4221 | MDGLRTFNFRFRNALTISKLLLPLAVAAIPEGLPAVITTCLALGTRKMAQKNAIVKKLPSVETLGCTTVICSDKTGTLTTIKSLLLRTGWSNRLLVKGAVESLLERSSFVQLADGSLVPIDDQWNFQTIRDTHPAHKKLLDPTYYSSIESDLVFVGVVGLRDPPREEVHKELRIASKLEARFLASRARHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTRFAKEASDMVLADDNFSTIVSAIAEVELIYNNMKAFIRYMISSNAGSESIFLAAALGIQNA* | 293 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa5g2907 | 292 | SUPERFAMILY | HAD-like | 69 | 283 | IPR036412 | - | |
| Psa5g2907 | 292 | Gene3D | - | 11 | 67 | - | - | |
| Psa5g2907 | 292 | Gene3D | - | 253 | 290 | - | - | |
| Psa5g2907 | 292 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 20 | 81 | - | - | |
| Psa5g2907 | 292 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 87 | 123 | - | - | |
| Psa5g2907 | 292 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 181 | 290 | - | - | |
| Psa5g2907 | 292 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 131 | 174 | - | - | |
| Psa5g2907 | 292 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 188 | 283 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa5g2907 | 292 | Pfam | haloacid dehalogenase-like hydrolase | 185 | 221 | - | - | |
| Psa5g2907 | 292 | PRINTS | H+-transporting ATPase (proton pump) signature | 179 | 195 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa5g2907 | 292 | PRINTS | H+-transporting ATPase (proton pump) signature | 207 | 223 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa5g2907 | 292 | PRINTS | H+-transporting ATPase (proton pump) signature | 239 | 264 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Psa5g2907 | 292 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 19 | 287 | IPR023298 | - | |
| Psa5g2907 | 292 | PANTHER | CALCIUM-TRANSPORTING ATPASE 2, ENDOPLASMIC RETICULUM-TYPE | 181 | 290 | - | - | |
| Psa5g2907 | 292 | PANTHER | CALCIUM-TRANSPORTING ATPASE 2, ENDOPLASMIC RETICULUM-TYPE | 131 | 174 | - | - | |
| Psa5g2907 | 292 | PANTHER | CALCIUM-TRANSPORTING ATPASE 2, ENDOPLASMIC RETICULUM-TYPE | 87 | 123 | - | - | |
| Psa5g2907 | 292 | PANTHER | CALCIUM-TRANSPORTING ATPASE 2, ENDOPLASMIC RETICULUM-TYPE | 20 | 81 | - | - | |
| Psa5g2907 | 292 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 73 | 79 | IPR018303 | - | |
| Psa5g2907 | 292 | Gene3D | - | 68 | 80 | IPR023214 | - | |
| Psa5g2907 | 292 | Gene3D | - | 182 | 252 | IPR023214 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa5g2907 | Psa-Chr5 | 222779040 | 222781433 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa5g2907 | 1 | 80 | Primary Pumps ATPases(2) | AT4G00900 | 75.610 | 1.81e-27 | 110 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa5g2907 | K01537 | - | gmx:100800498 | 265.003 |