Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2898 ATGGAGGAATCTCAGAATTTGATATGGATGAAAAGGAAACAGGTCTTGAACTCGGATATTGAAGTAGGAGTGCCATCATTTGGAGGTATGAGCAACAACAATAGCTCTTGGGAGGAAAAGGCTTTTGCAGAAGACGCGGCTAGAATACTCGGCGGATGTATATGGCCACCAAGATCTTACTCATGTCACTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTTTAGGTGGTCACATGAATGTTCATAGAAGAGACCGAGCTAGGCTCAAACAAACTCTTACCAACCATAATGATTTTACAACAATTAGTAGAGTTTCAACTGCATCTACACAAGAAAATTGTTTTCAGATTCAGCCCAACGCGTCTTCAATGAGATGGGGGAATTCGAATAACCACATGGAGTTTCATGATTCTGAATCAAAAGGGCTACTAGTTCATGCAAGGGAACAAATTTTCAAAGGGTATGGTTGTAATGATTATGTTGAAACAAGTTTGTCTATGGGACAAAATAATTCAATGTTTGTCCAAAAATTGCAAATTGATGGTGATTCATGTGGGGACAAAGGGATAAATTATAAAAAACCAAAGACATCAGCTTCTATTTCTTCTTCACTTCCTGTCTTGCTGAAGCCATGTTTGAATGATAGATGTCTAACTTTTCAGTCTGCAGTTGGAATTAAGCCTGGAATGGAAGACTTGGATCTTGAACTCAGGCTAGGGAAATTAACACAGAAAGTTTAG 741 0.3873 MEESQNLIWMKRKQVLNSDIEVGVPSFGGMSNNNSSWEEKAFAEDAARILGGCIWPPRSYSCHFCKREFRSAQALGGHMNVHRRDRARLKQTLTNHNDFTTISRVSTASTQENCFQIQPNASSMRWGNSNNHMEFHDSESKGLLVHAREQIFKGYGCNDYVETSLSMGQNNSMFVQKLQIDGDSCGDKGINYKKPKTSASISSSLPVLLKPCLNDRCLTFQSAVGIKPGMEDLDLELRLGKLTQKV* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2898 246 Pfam C2H2-type zinc finger 60 84 - -
Psa5g2898 246 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 246 - -
Psa5g2898 246 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Psa5g2898 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Psa5g2898 246 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Psa5g2898 246 PANTHER OS07G0101800 PROTEIN 1 246 - -
Psa5g2898 246 Gene3D Classic Zinc Finger 57 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2898 Psa-Chr5 220936419 220939051 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2898 31 91 C2H2 Transcription Factor Family AT2G37740 77.049 2.72e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g2898 zf-C2H2_6 3.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2898 - - aprc:113851273 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g5485 7 472041796 472043627 Psa5g2898 5 220936419 220939051 ECH
Psa5g2898 5 220936419 220939051 Psa5g2898 5 220936419 220939051 ECH