Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2897 ATGAGAAATTTCAATAACACGGGAGGAACCAAAAAAAGTAACATCAACCCTAGTCCAACAATCCTCAAATCCCCGGAAGGAGTGATGACAATGACTGCTTCATTATGGAGTCCTTTCACATATGTTCAATTGAGAGAGCTGGAAAGACAAATTATGATTTACAAGTACTTTATGGCTTGTGTTTCTGTTCCTGCTTATCTTCTCTCATCCAGCCCTGCCTCAACAACTAGTAACATTACTGATCCAGTGGAAGGTAGATGCAGAAGAACAGATGGTAAAAAATGGAGATGTTTGAAATATGCTACTCCTAATAACAACTATTGCGAGCGACATATGCATAGAGGTAGTGGCCGTTCAAGAAGAGGTAGTGGCCGTTCAAGAAGATCTGTGGAACTTGGCATGAATAGTAGAGGAAATTGTTCATCACATTTTCTTGCTTCCAGGGCTTCTCATCCTTATCTCCAACCCTCCTTTTCCTGTGATAATCACCGCTTTGGTCTCAGATTAGCTCCATGTTTTGACCCTTCAAACATGCAACTAAGGATGCTGAATGAAGATCCAATGTCTCTTGGTGCTTCTAACTCAGGATGGCACAACAACATACCTGTGAAGTCACTTCCACAATCTAATACTCTCTTGTTATATAATCCACTTCTTGTTCCTCTCCAATCTGAAAAGCCAAGAGGGATTAGTTGCAATGCCTCTGCATCTGCATCTGTTGATCAATCAATGATGGATCCACTAGGCGAAATGCTGAAGCAAAGCAATACCATTTCCATTAGTGACTCAAGCAGCACGGATTCATCTTCTCCGGTTGAATTCGCTGGCACAGGAGGAGGAACATGA 846 0.4184 MRNFNNTGGTKKSNINPSPTILKSPEGVMTMTASLWSPFTYVQLRELERQIMIYKYFMACVSVPAYLLSSSPASTTSNITDPVEGRCRRTDGKKWRCLKYATPNNNYCERHMHRGSGRSRRGSGRSRRSVELGMNSRGNCSSHFLASRASHPYLQPSFSCDNHRFGLRLAPCFDPSNMQLRMLNEDPMSLGASNSGWHNNIPVKSLPQSNTLLLYNPLLVPLQSEKPRGISCNASASASVDQSMMDPLGEMLKQSNTISISDSSSTDSSSPVEFAGTGGGT* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2897 281 MobiDBLite consensus disorder prediction 258 281 - -
Psa5g2897 281 ProSiteProfiles QLQ domain profile. 38 73 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa5g2897 281 PANTHER GROWTH-REGULATING FACTOR 7 11 223 - -
Psa5g2897 281 PANTHER - 11 223 IPR031137 GO:0005634|GO:0006351|GO:0032502
Psa5g2897 281 Pfam QLQ 38 68 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa5g2897 281 Pfam WRC 84 121 IPR014977 -
Psa5g2897 281 SMART QLQ_2 37 73 IPR014978 GO:0005524|GO:0005634|GO:0006355
Psa5g2897 281 MobiDBLite consensus disorder prediction 258 275 - -
Psa5g2897 281 ProSiteProfiles WRC domain profile. 81 126 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2897 Psa-Chr5 220519054 220520851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2897 9 121 GRF Transcription Factor Family AT5G53660 49.153 1.75e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Psa5g2897 WRC 3.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2897 - - mtr:MTR_3g092330 154.066