Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2892 ATGTTGATGGGTTGTTGCTTTAGTGCAAAGGTCAAAGCTGTGAGTCCTACACATAATGGTTTGAATTCAAAGGTTGTTGGGAAAGAAGAGGATGTTTTGAGTGGTTTAAGCAGGAGGGTCTCTTCTTCTGCACACGTGCTTCTAACTTCTAGAACTGAGGGTGAGATACTGCAATGCATCAATTTGAAGTGTTTCACAATCAATGAGGTAAGAACAGCGACAAGGAACTTTCGGCCGGATAGTATGGTGGGTGAAGGTGGATTTGGTTGTGTATTTAAGGGTTGGATCGACGAACATACGCTAGCTCCGACTAAACCAGGTACTGGTTTTGTCATTGCTGTGAAGAGGCTTAACCAAGAAAGCAGTCAGGGACATAGTGAATGGTTGACAGAAATCAATTATCTGGGACAGCTGCGTCATCCTAATCTTGTGAAACTAATTGGTTACTGCTTAGAGGATGATTACCGGATTTTGGTATATGAATTTGTAACCAAGGGAAGTTTGGATAACCATTTGTTTAGAAGGGCTTCTTACTTTCAGCCACTCTCTTGGAAAATCCGAATGAAGATAGCTCTTGATGCTGCTAAAGGTCTTGCGTTTCTTCATAGCGATGAAGTCGATGTGATATATCGAGACTTCAAAACTTCGAATATCTTGATTGATTCTAACTATAATGCAAAACTCTCCGATTTTGGGATGGCAAAAGATGGACCAGAAGGCGGTAAGAGCCACGTATCTACAAGGATAATGGGCACCCCAGGTTATGCGGCTCCCGAGTATCTAGCCACAGGTCACCTAACCAAAAAGAGTGACGTATACAGTTTCGGAGTTGTTCTCTTGGAAATTATGTCGGGCAAACGCACATTAGATACAAACCGGCCCTCTGGGGAGCATAACTTAGTGGAGTGGGCCAAACCATTACTCGTGAGCAAACGCAAGATCTCCCAAGTCATGGATGCTCGTATAGAAGGCCAGTACTCGTTGCGTGAAGCAGTGAAAGTTGCTCACATTGCCATTCTATGCTTGTCGGCAGAACAAAAATATAGACCAAACATTGACGAGGTGGTGAGATCGTTGGAACAACTTCAGGATTCTAATGACAAAACAGATGGCCATAGTAGTAGTGGTTTAAAACACGGAAAAAGAGTCGATGAATCTTTAAGCAGAGAAGGTACTTCTAATCCAAGTTCATCAGCTTCTCCTCTTAATAAGTAA 1215 0.4272 MLMGCCFSAKVKAVSPTHNGLNSKVVGKEEDVLSGLSRRVSSSAHVLLTSRTEGEILQCINLKCFTINEVRTATRNFRPDSMVGEGGFGCVFKGWIDEHTLAPTKPGTGFVIAVKRLNQESSQGHSEWLTEINYLGQLRHPNLVKLIGYCLEDDYRILVYEFVTKGSLDNHLFRRASYFQPLSWKIRMKIALDAAKGLAFLHSDEVDVIYRDFKTSNILIDSNYNAKLSDFGMAKDGPEGGKSHVSTRIMGTPGYAAPEYLATGHLTKKSDVYSFGVVLLEIMSGKRTLDTNRPSGEHNLVEWAKPLLVSKRKISQVMDARIEGQYSLREAVKVAHIAILCLSAEQKYRPNIDEVVRSLEQLQDSNDKTDGHSSSGLKHGKRVDESLSREGTSNPSSSASPLNK* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2892 404 MobiDBLite consensus disorder prediction 389 404 - -
Psa5g2892 404 Pfam Protein tyrosine and serine/threonine kinase 81 359 IPR001245 GO:0004672|GO:0006468
Psa5g2892 404 ProSitePatterns Protein kinases ATP-binding region signature. 83 115 IPR017441 GO:0005524
Psa5g2892 404 Gene3D Transferase(Phosphotransferase) domain 1 163 383 - -
Psa5g2892 404 MobiDBLite consensus disorder prediction 362 404 - -
Psa5g2892 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Psa5g2892 404 PANTHER KINASE 1B 34 381 - -
Psa5g2892 404 MobiDBLite consensus disorder prediction 362 388 - -
Psa5g2892 404 SUPERFAMILY Protein kinase-like (PK-like) 57 361 IPR011009 -
Psa5g2892 404 ProSiteProfiles Protein kinase domain profile. 77 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g2892 404 Gene3D Phosphorylase Kinase; domain 1 53 162 - -
Psa5g2892 404 PANTHER OS01G0588500 PROTEIN-RELATED 34 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2892 Psa-Chr5 219886325 219889644 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2892 55 359 Glycoside Hydrolase AT3G07070 46.405 4.35e-96 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa5g2892 PK_Tyr_Ser-Thr 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2892 - - gmx:106795104 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2892 5 219886325 219889644 Psa6g3498 6 296669179 296671757 PCT