Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2886 ATGATTTTGGGGTTATTTGATTTGAATTTTGAATCAGATTTTGATTTTTTTGAGATCTGGATTATTATGTCTACGGAGACGATTTCGTATTGGTGTTACAGATGCAGTCGTATTGTTAGGTTAGGGAGACAAGAAACGGTGGCTTGCCCTGATTGTGAGAGCGGGTTTCTCGAGGAAGTTGACCAACCGTCGCGCTCTCGCTCTCTCTCCCGCCGCCGACGTTTTCCGGCTGCAGCCATGTACATGATCGGTCAACGTTCTGGTTCTGGTTCTGATCATAATCATAATTTTCGTCAACCTTCTCTCAGAAGTACTCGCCGGAACGGTGGTGACCGGTCTCCTTTCAATCCGGTTATTGTCCTTCGCGGCGGTGGTGGATCGATGGAGGTAACAGAAGGAGGTAACGATAACAACGGCGTTGTTGGTGTTGGAGGAGGTGTTGGAGGAGGTGTTGGAGGTGGAGAGAGTCGTGGGTTTGAGCTTTTCTATGATGACGGTGCTGGTTCTGGATTAAGACCTTTGCCTCCGAGTATGTCAGAGTTTCTTCTTGGATCTGGATTTGATAGATTGTTGGAGCAGCTTTCTCAGATTGAAATCAATGGGATTTCGAGATATGAACATCCTCCGGCGACAAAATCGGCTATTGATTCTTTACCAACGATTGAAATTGATAATACTCATTTGGAAATGGAATCGCACTGTGCAGTTTGCAAGGAGGCTTTTGAATTAACTACTATTGTTAGAGAAATGCCTTGTAAGCATATTTATCATCCTGAATGTATTTTACCTTGGCTTGCACTTCATAATTCTTGCCCTGTTTGTCGTCATGAGTTGCCGTCTGATTCGGATGCCGGAACGAATGTTCATCCGCAATCGCAAGCACAATCACCACCGCAAACACAAACACACTCGCAAGCACAATCACTACCGCAAACACAAACACACTCGCAGTTGCCTGGTTTGAATGAGGAAGAGAGTAATGTTGGAGAGACAAGGTCTTTGAGGAATAATTCCTCTCATTCTTCAACTATGGATCCGTCTCCGCGGTCGCGAAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGATCATGGTAG 1098 0.4526 MILGLFDLNFESDFDFFEIWIIMSTETISYWCYRCSRIVRLGRQETVACPDCESGFLEEVDQPSRSRSLSRRRRFPAAAMYMIGQRSGSGSDHNHNFRQPSLRSTRRNGGDRSPFNPVIVLRGGGGSMEVTEGGNDNNGVVGVGGGVGGGVGGGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGISRYEHPPATKSAIDSLPTIEIDNTHLEMESHCAVCKEAFELTTIVREMPCKHIYHPECILPWLALHNSCPVCRHELPSDSDAGTNVHPQSQAQSPPQTQTHSQAQSLPQTQTHSQLPGLNEEESNVGETRSLRNNSSHSSTMDPSPRSRRTWSMDVNSGMRSW* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2886 365 MobiDBLite consensus disorder prediction 282 365 - -
Psa5g2886 365 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
Psa5g2886 365 SMART ring_2 234 274 IPR001841 -
Psa5g2886 365 Pfam zinc-ribbon 29 59 IPR039525 GO:0061630
Psa5g2886 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 281 IPR013083 -
Psa5g2886 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 24 331 - -
Psa5g2886 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 24 331 - -
Psa5g2886 365 MobiDBLite consensus disorder prediction 284 365 - -
Psa5g2886 365 Pfam Ring finger domain 233 275 IPR001841 -
Psa5g2886 365 CDD RING-H2_RNF126_like 234 275 - -
Psa5g2886 365 MobiDBLite consensus disorder prediction 87 109 - -
Psa5g2886 365 SUPERFAMILY RING/U-box 214 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2886 Psa-Chr5 219435056 219436414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2886 173 281 C3H Transcription Factor Family AT5G01980 43.119 1.55e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2886 - K11982 gmx:100807324 368.622