Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2881 ATGGCTAATCGATGGTGGACTGGGAATGTGGCAACGATGCCAACATCACCGACTTCGCTTCAACAGCTGAAGAGAGAGCAAGAGTTAATGGAAAGTAACAACAACGCGAACTCGACTCCAACGAATAGCAGTAACAGCAACAATAATGAAGATGAAGATAACAACAACCCTGAAGATCAGAATCCTTCGGAGCCCGGTAGTAGTAGTGGTCGGAGGCCACGAGGTAGACCGCCGGGTTCGAAGAACAAACCCAAACCGCCTATTGTTATAACGAAAGAATCTCCGAACGCGCTGCGAAGCCACGTGTTAGAAATTAGCAGCGGTAGTGATGTGGCGGAGAGCATAGCTACCTTTGCTAACCGCCGTCACCGTGGTGTGTCGGTTTTGAGTGGGAGCGGCATTGTGACTAATGTGACGCTTAGGCAACCGGCTGCTCCCGCTGGTGTTATTACTCTTCATGGAAGGTTTGAGATTCTGTCGCTTTCGGGTGCTTTTCTGCCTTCGCCATCTCCGCCTGGAGCGACCGGGCTTACTGTTTATTTAGCCGGTGGTCAGGGGCAGGTTGTGGGTGGCGCTGTGGCGGGTTCTTTGGTTGCTTCTGGACCTGTGATGGTTATTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGTTGCCATTGGAAGATGAACAAGGTGGTGATCAAGAGGAAATGCAAGTTGAACAACAATCTGGTGTGGATTCAGCAACTGTTGTAGCAGCAGGAGTTGCTTCTTCTCAAGGTTTGGATTTCGCCGAACAACAGCACCATCATCATCAACAACAACAACAGGTTTCAATGCCTATGTATAACTTGCCACCAAATCTTATACATAACGGTAATCAAATGCCTCATGATATGTTTTGGGGTCCTCCACCTCCTCGTCCTCCTCCTCCTTTCTGA 921 0.4897 MANRWWTGNVATMPTSPTSLQQLKREQELMESNNNANSTPTNSSNSNNNEDEDNNNPEDQNPSEPGSSSGRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEISSGSDVAESIATFANRRHRGVSVLSGSGIVTNVTLRQPAAPAGVITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGAVAGSLVASGPVMVIAATFANATYERLPLEDEQGGDQEEMQVEQQSGVDSATVVAAGVASSQGLDFAEQQHHHHQQQQQVSMPMYNLPPNLIHNGNQMPHDMFWGPPPPRPPPPF* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2881 306 MobiDBLite consensus disorder prediction 1 51 - -
Psa5g2881 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 305 IPR014476 GO:0003680
Psa5g2881 306 PIRSF ESCAROLA 12 304 IPR014476 GO:0003680
Psa5g2881 306 MobiDBLite consensus disorder prediction 1 95 - -
Psa5g2881 306 CDD DUF296 99 181 IPR005175 -
Psa5g2881 306 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 305 - -
Psa5g2881 306 Gene3D - 98 237 - -
Psa5g2881 306 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Psa5g2881 306 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 223 - -
Psa5g2881 306 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2881 Psa-Chr5 219230018 219233575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2881 1 306 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 49.852 9.09e-76 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2881 - - gmx:100791954 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2881 5 219230018 219233575 Psa2g0916 2 64700339 64702599 PCT