Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2859 ATGATCTGGGAGTTCGGTTTTTCATGTCTTGGTGGTAGTACTAGTAGCCGTTCAACTTCAAGGAGGAACTTGAGTCATGAACAAAACGACGAAAATGATCACAAAACGACAACTTTGGAGCACAACAAGGCTTGGTTGTTAGCTGAGTCTGGTGGGTGTGGACCAGAGTTGAACAATGCTGATCCTCAATCTGTTCACTCTTCTTTTAGGTTCAGTTTTTATTCTCAGGTGGAGTTGGAGTCTTTGAATTTGAGTTCTTCTACTGCTGCTACTGTTTTGATGGTGAATTTGGATAATGGGGTTACTGAATCTCGTGCTAAGGAGTTGAAATTGAGGAGAGTTGAGTCTTTGGAGAAGACTATTTCTCCTGTTGCTCACTCTTTGATTAGGTTTACCTTTGCTGAAATTGTTTCTGCTACTAGGAATTTCTCCAAAGGTAGGGTGTTGGGGAGAGGGGCGTTGAGCTGTGTTTTTAGGGGAAGAGTTGGTTTTTTGAGAACTGCTGTAGCAATTAAGCAATTGGACAAGGAAGATAAGGAATCTGCAAAGGCTTTTTGTAGAGAATTGATGATTGCTAGTTCTCTTCATAGTCCTAATGTTGTTCCCCTTGTTGGTTTTTGTATTGACTCTGAGGAGGGTTTGTTTTTGGTTTACAAGTATGTCTCTGGCGGAAGCTTGGAGCGACACTTGCATGGGAGGAAGAAAGGTGGGAAGGGTAGTTCGACACTTCCGTGGTCTGTGAGGTACAAGGTTGCAATTGGGATTGCAGAAGCTATAGCTTATCTGCATAATGGAACTGAAAGATGTGTTGTTCATAGGGACATTAAGCCCTCTAACATTCTGCTTTCTTCAAAGAAGACTCCCAAGTTATGTGATTTCGGATTAGCTACTTGGACTTCTGCGCCTTCCGTTCCTTTCCTTTGCAAAACCGTCAAAGGAACATTTGGATATTTGGCTCCTGAGTATTTCCAACACGGGAAAGTATCAGATAAGACCGATGTTTACGCTTTTGGAGTGGTTTTATTGGAACTCATTACTGGACGGAAGCCAATTGAAACGAAAAGATCTCCGGGAGAAGAGAATTTAGTCTTATGGGCTAAACCTTATCTTCAAAAGGGGAAAGGAGCAATTGAAGAGTTGCTTGATCCTCAACTCAAGTGCAATTTGAGATACTCAAATCAAATCGGTAGAATGATTGAAGCAGCAGCTGTTTGTGTCACAACTGAAGAATCTAGGAGACCTGGCATTCGCGAGATTATCGCAATACTGAAAGGTGAAGAAGAACCTGTTTTCTCTAAAAGAAGAAAGTCGAGTTTTCTTGGAAACGGATGCGTGATTGATTGTTATTCTCAGTTACAACAATCCAACAGCGAGATGAAAAGTCACTTGGCTTTGGCAATGCTAGGAGTTTCAGAGTTTGAGGATGATGATTATCTCTATGTATGTTAA 1449 0.4148 MIWEFGFSCLGGSTSSRSTSRRNLSHEQNDENDHKTTTLEHNKAWLLAESGGCGPELNNADPQSVHSSFRFSFYSQVELESLNLSSSTAATVLMVNLDNGVTESRAKELKLRRVESLEKTISPVAHSLIRFTFAEIVSATRNFSKGRVLGRGALSCVFRGRVGFLRTAVAIKQLDKEDKESAKAFCRELMIASSLHSPNVVPLVGFCIDSEEGLFLVYKYVSGGSLERHLHGRKKGGKGSSTLPWSVRYKVAIGIAEAIAYLHNGTERCVVHRDIKPSNILLSSKKTPKLCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIETKRSPGEENLVLWAKPYLQKGKGAIEELLDPQLKCNLRYSNQIGRMIEAAAVCVTTEESRRPGIREIIAILKGEEEPVFSKRRKSSFLGNGCVIDCYSQLQQSNSEMKSHLALAMLGVSEFEDDDYLYVC* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2859 482 SMART serkin_6 143 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g2859 482 PANTHER OS01G0750732 PROTEIN 1 480 - -
Psa5g2859 482 SUPERFAMILY Protein kinase-like (PK-like) 123 423 IPR011009 -
Psa5g2859 482 Gene3D Transferase(Phosphotransferase) domain 1 221 438 - -
Psa5g2859 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Psa5g2859 482 Gene3D Phosphorylase Kinase; domain 1 102 220 - -
Psa5g2859 482 Pfam Protein kinase domain 144 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g2859 482 ProSiteProfiles Protein kinase domain profile. 143 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g2859 482 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 1 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2859 Psa-Chr5 217496699 217499955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2859 131 426 Trihelix Transcription Factor Family AT1G70460 42.617 1.63e-69 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Psa5g2859 Pkinase 1.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2859 - - adu:107481060 826.624